Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01073 ATGGAGTTTGACCTTGAAAACCCTTTGGAAAATCTTCACCCTGATGCCCTCTCTTACCTATTCCTCATCGAATCTGACCACACCCCATCGCAGAATCACTCTCACACTCTCAGAGACAGAGATCTTGACATCTCCGTCAGAACAGAACTCATTTCCTTAATCTCACAGTTGTCTTGTACTTTGGATCCGGTTTTGTGCTACCTTGCAATCAACTATCTGGATCGGTTCCTAGCCAACCAAGGGATTTTGCAAACAAAGCCATGGGCCCTTAGGCTCATTGCTGTCTCTTGCATTTCTCTTGCTGTCAAAATGATGAGAACTGAATACCCTACCACTGATGTCCAGACCCTTTTGAATCAAAGTGATGGTGGCATCATCTTTGAGGCACAAACAATACAAAGAATGGAAACACTAATCTTGGGAGCATTAAAATGGAGGATGAGGTCGATCACCCCCTTCTCCTTCGTAGCCTTCTTTATTGCCTTGATCGAGATCAAAGACTCACCTATGGGACAGGTTCTGAAAAACCGAGCCTCTGAAATCATATTCAAGTCACAAAGAGAGATAAGGCTTTGGGAATTCAAGCCATCTATTATTGCTGCATCTGCCCTTCTCTGTGCCTCTCATGAGTTGTTTCCTTTTCAATATCCGTCCATCTTAAAAGCAATATCCGATTCTTCATATGTAAATAAAGAAAATGTCGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAGGAGTACGAGTCTGCGTTGAATGGGGTTTCAAGGTCAGAGACACCGATTAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAAAAACCAACGGAATCATCGTTGCTGATTCTCCTCTGAGACAAGAGGGGGACCTCAAAAGAAGGAAAATCACTGGATGTGGAAACAATCCAACGATCCATAATTCTTGGACTAAACCATGCTCAAGAGCTACTGAAAGAGAGTAA 975 0.4287 MEFDLENPLENLHPDALSYLFLIESDHTPSQNHSHTLRDRDLDISVRTELISLISQLSCTLDPVLCYLAINYLDRFLANQGILQTKPWALRLIAVSCISLAVKMMRTEYPTTDVQTLLNQSDGGIIFEAQTIQRMETLILGALKWRMRSITPFSFVAFFIALIEIKDSPMGQVLKNRASEIIFKSQREIRLWEFKPSIIAASALLCASHELFPFQYPSILKAISDSSYVNKENVEQCYKVIQDIAIEEEYESALNGVSRSETPINVLDHHFLSSESEKTNGIIVADSPLRQEGDLKRRKITGCGNNPTIHNSWTKPCSRATERE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01073 324 CDD CYCLIN 47 140 IPR013763 -
Cca04g01073 324 Pfam Cyclin, C-terminal domain 150 249 IPR004367 -
Cca04g01073 324 Gene3D - 19 239 - -
Cca04g01073 324 SUPERFAMILY Cyclin-like 13 147 IPR036915 -
Cca04g01073 324 SMART Cyclin_C_2 150 263 IPR004367 -
Cca04g01073 324 Pfam Cyclin, N-terminal domain 21 147 IPR006671 -
Cca04g01073 324 SMART cyclin_7 48 141 IPR013763 -
Cca04g01073 324 Gene3D - 30 148 - -
Cca04g01073 324 PANTHER CYCLINS 5 303 IPR039361 -
Cca04g01073 324 PANTHER CYCLIN-D6-1-RELATED 5 303 - -
Cca04g01073 324 SUPERFAMILY Cyclin-like 132 246 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01073 Cca-Chr4 11979417 11981834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01073 1 297 Core Cell Cycle Gene Families AT4G03270 43.631 6.51e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01073 K18812 - gmx:100783875 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01073 04 11979417 11981834 Cca04g01073 04 11979417 11981834 ECH
Cca10g00779 10 9038307 9040532 Cca04g01073 04 11979417 11981834 PCT