Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01071 ATGGTAAGAGCTCCATTCTATGACAAAAATGGACTGAAGAAAGGTGCATGGAGTAGAGAAGAAGACGAGATGTTAAGAGCTTATGTTCACAGATATGGTCATTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCAAGGTGTGGAAAAAGTTGTAGACTTCGTTGGTTGAACTACTTGAGACCAAATCTAAAACACGGCAACTACACCCCAGAAGAAGAACAAATAATCATCAAATTACACCAAAAATTTGGAAATAAATGGTCCTTGATTGCTGAAAAACTGCCTGGAAGAACGGACAATGAGGTAAAGAACTATTGGCATAGCCACCTGAAAAAGAACAAAGAAATCACAATATCTATGCCCGGTGATAGTCTTGAAGGAAATTTAAATGAGACTCATCAATCTGAAAAATCTGAATGCCATGGTGAAGATGTTGGTAATAATGGCTTTCCTCATATTTTAGAAAGCTCATTGGCTATGTCCACGGAAAAATCATCAGAAGACAACTATTCCCTCACCTCTAATGTTGCACTATCAACCATAGACAACTTCTTAGCAAAAGAAGATAGTGTTCCTCCATTGGCCTCATACGAAGAATTCAGCGGCGATTTTTGGACTGAACCATTCCTCGTACAAGATACATATATAGATGATATATGCAGTGGTGAAGACATAGCATTATTAGTTCCAAACTTCGATGGTACTTTTTTGTTGTAG 723 0.3817 MVRAPFYDKNGLKKGAWSREEDEMLRAYVHRYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTPEEEQIIIKLHQKFGNKWSLIAEKLPGRTDNEVKNYWHSHLKKNKEITISMPGDSLEGNLNETHQSEKSECHGEDVGNNGFPHILESSLAMSTEKSSEDNYSLTSNVALSTIDNFLAKEDSVPPLASYEEFSGDFWTEPFLVQDTYIDDICSGEDIALLVPNFDGTFLL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01071 240 CDD SANT 69 112 IPR001005 -
Cca04g01071 240 SMART sant 13 63 IPR001005 -
Cca04g01071 240 SMART sant 66 114 IPR001005 -
Cca04g01071 240 CDD SANT 16 61 IPR001005 -
Cca04g01071 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca04g01071 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca04g01071 240 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca04g01071 240 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Cca04g01071 240 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca04g01071 240 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca04g01071 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Cca04g01071 240 PANTHER MYB TRANSCRIPTION FACTOR 1 220 - -
Cca04g01071 240 Gene3D - 69 115 - -
Cca04g01071 240 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca04g01071 240 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01071 Cca-Chr4 11932365 11933843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01071 1 139 MYB Transcription Factor Family AT2G31180 60.714 1.12e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01071 Myb_DNA-binding 8.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01071 K09422 - gmx:100781032 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01071 04 11932365 11933843 Cca04g01071 04 11932365 11933843 ECH
Cca10g00777 10 9021718 9022381 Cca04g01071 04 11932365 11933843 PCT