Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01069 ATGGTGAGAACCCCATCTTGTGATAAAAGTGGATTGAGGAAAGGTACTTGGACTCCTGAGGAAGATATGAAGTTAATTGCCTATGTCACTAGATATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGACTGAGATGGATGAATTATTTAAGGCCTAACCTCAAAAGAGGGAACTTCACTAAAGAAGAAGAAGAGTGCATCATCAGAATGCACAAAGATCTTGGTAACAGATGGTCTGCCATTGCGGCTGAGTTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACACTAAAGAAGAGTTCTCAACAAAGCACACTCACAAATGAAGAAGCCAGAGCCTCCAAATCGAAGGATAAAAGATCCAAGTCAGTAAGGGACTCGGTTCCTATTCCTAACAATGGTGTTACTGTTAGTGTTACTCTTCCACCTACTTCCCAGATTTCAGATAACTCATCAGGCTCATTATCCACACTTTCATCCTCTAGCGACTTTTCCTCCATAAGTTCTGATCATTCCACTGCTGCCAGTATGGAAAATTTGGCGTTTGAAAATGACTTGAGTTTTCTGGATTCATTCAGTGAAAGTTTCTGGACGGAGCTAAATCTTGATAACATTTCCTACAATGCACCGTGTGAAGTAGTATCAGGACATTCAGGAGATATCAATAATGGCTCTTTTCAAAGTACAGATTCTAGCCAAATCCATGATTCTTTTGCATTGTCTCCGCATCAATATTCAAGCAGGCAAAGTGTGATTGTGGATAATGACTTTGGAGGCTTTCTGGATGCATACGCAGATAACTTTTGGACACAGCCATATATCGCTGACATGTCCCACGTTCCAAGCGAACTACTTGCTCCCTCCGTGATAGGATCTGAATATTTTGCTCCAATAAATGAGTATCAGTGGGGTCAAAGTGATTTGTACAATGAAAATACGAGCATAAATGTACCAAGAGAGAAAGTGATATAG 1017 0.412 MVRTPSCDKSGLRKGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTKEEEECIIRMHKDLGNRWSAIAAELPGRTDNEIKNHWHTTLKKSSQQSTLTNEEARASKSKDKRSKSVRDSVPIPNNGVTVSVTLPPTSQISDNSSGSLSTLSSSSDFSSISSDHSTAASMENLAFENDLSFLDSFSESFWTELNLDNISYNAPCEVVSGHSGDINNGSFQSTDSSQIHDSFALSPHQYSSRQSVIVDNDFGGFLDAYADNFWTQPYIADMSHVPSELLAPSVIGSEYFAPINEYQWGQSDLYNENTSINVPREKVI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01069 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca04g01069 338 CDD SANT 69 112 IPR001005 -
Cca04g01069 338 CDD SANT 16 61 IPR001005 -
Cca04g01069 338 Gene3D - 14 66 - -
Cca04g01069 338 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 257 - -
Cca04g01069 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca04g01069 338 SMART sant 13 63 IPR001005 -
Cca04g01069 338 SMART sant 66 114 IPR001005 -
Cca04g01069 338 MobiDBLite consensus disorder prediction 111 125 - -
Cca04g01069 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca04g01069 338 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca04g01069 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca04g01069 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Cca04g01069 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca04g01069 338 MobiDBLite consensus disorder prediction 126 140 - -
Cca04g01069 338 MobiDBLite consensus disorder prediction 141 169 - -
Cca04g01069 338 MobiDBLite consensus disorder prediction 109 169 - -
Cca04g01069 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca04g01069 338 Gene3D - 69 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01069 Cca-Chr4 11832924 11834516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01069 1 223 MYB Transcription Factor Family AT2G31180 45.982 1.66e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01069 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01069 K09422 - gmx:778184 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00776 10 8958568 8961175 Cca04g01069 04 11832924 11834516 PCT
Cca04g01069 04 11832924 11834516 Cca10g00777 10 9021718 9022381 PCT