Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01068 ATGGTGAGAACCCCATCTCGTGATAAAAGTGGATTGAGGAAAGGTACTTGGACTCCTGAGGAAGATAGCAAGTTAATTGCTTATGTCACCAGGTATGGCAGCTGGAATTGGCGCCAACTCCCCAGGTTTGCAGGACTTGCAAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTAAGGCCTAATCTCAAAAGAGGGAACTACACTCGAGAAGAAGAAGAATGCATCATCAGAATGCACAAAAAACTTGGCAATAGATGGTCTGCTATTGCGGCTGAATTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACACTCAAGAAGAGGTCTCAACAAAACACGCTCACAAATGAAGAAGCCAGAGCCTCCAAATCAAAGGATAAAGAATCCAAGCTAGGAAGGGACTCGGTTCCTAAGAATGGTGTTAATGTTAGTGTCACTCTTCCATGTACTTCCCAAATCTCAGACATTTCAGACTCATTATCGCCACTTTCATCCTCCAGCGAGTTTTCCTCCTTAAGTTCTGATCATTCCACTGCAGCCAGTATGAAAAATTTGATGTTTGAAGATGACTTGGGTTTTCTGGATTCATTCAATGAAAGTTTCTGGACAGAGCTAAATCTGGATGACATTTCCTATAATGCACCGAGTGAAACAGTGTCAGGAGATACTAACAATGGCTCTTTTCAAAGTACAGATTCTAGCCAGATCCATGATTTTAGTGCTTTCTCTCCGAATCAATCAACCAGCGAAAGTTTGGTCATAGACAATGATTTTGGAGGCTTTCTGGATGCATACGCAGATAACTTTTGGACACATCCATATGTTGCTGACATGTCCCACGTTCCAAGCGAACTACTTGTTCCCTCCGTCTCCGTGGCAGAATCTGATTATTTTCCACCAATATACGATGATCTGTGGGGTTAA 945 0.4222 MVRTPSRDKSGLRKGTWTPEEDSKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNLKRGNYTREEEECIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSQQNTLTNEEARASKSKDKESKLGRDSVPKNGVNVSVTLPCTSQISDISDSLSPLSSSSEFSSLSSDHSTAASMKNLMFEDDLGFLDSFNESFWTELNLDDISYNAPSETVSGDTNNGSFQSTDSSQIHDFSAFSPNQSTSESLVIDNDFGGFLDAYADNFWTHPYVADMSHVPSELLVPSVSVAESDYFPPIYDDLWG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01068 314 MobiDBLite consensus disorder prediction 109 150 - -
Cca04g01068 314 CDD SANT 69 112 IPR001005 -
Cca04g01068 314 MobiDBLite consensus disorder prediction 126 141 - -
Cca04g01068 314 CDD SANT 16 61 IPR001005 -
Cca04g01068 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca04g01068 314 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 242 - -
Cca04g01068 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca04g01068 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Cca04g01068 314 Gene3D - 6 67 - -
Cca04g01068 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca04g01068 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca04g01068 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca04g01068 314 Gene3D - 69 141 - -
Cca04g01068 314 SMART sant 13 63 IPR001005 -
Cca04g01068 314 SMART sant 66 114 IPR001005 -
Cca04g01068 314 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca04g01068 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01068 Cca-Chr4 11823776 11825450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01068 1 212 MYB Transcription Factor Family AT2G31180 47.642 3.29e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01068 Myb_DNA-binding 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01068 K09422 - gmx:778184 432.565