Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01067 ATGATGGGGAGAACCCCGAGGTGTGAGAAAAATGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGATTGATTATGTTACCAGGTATGGCCACTGGAATTGGCGACTACTCCCCAAGTTCGCAGGTCTTGCAAGATGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTACCTAAGACCAAACGTCAAAAGAGGGAACTACACCGAAGAAGAGGAGGAAACTATAATCAAGCTGCACCGACATCTGGGTAACAGATGGTCTGCCATTGCTGCTAGGATGCCAGGAAGAACTGACAATGAAATAAAAAACTATTGGCACACCAACCTGAAGAAGAGGTCTCAACAGGAGTCACTCACAAATGCTCAAGTTTCCAACTCAAATGATTCATCTCCAACTGAACCGACTCCAAACACTTTCAAAAACTTGCATAATGATTCATATCCTTCCTCCTCCACGGGCTCAGAGTACACCACTGTCATAGTCACAGGCGATGAAAATGTGGTCCTGGAAGATGAGTTGGCCTTTTGGGATGCAGACACCGACCTTACGAGTGCAAACTTCTGGTTAGAATCGTTTATGCTTGATATTTCCAACTATGGCCCAGCTGAACCTGAGTTCTTTAGCACAGAGTTTGATGCAGAACTTTGGACCCATGATAATTGA 675 0.4489 MMGRTPRCEKNGLKKGTWTPEEDKKLIDYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNVKRGNYTEEEEETIIKLHRHLGNRWSAIAARMPGRTDNEIKNYWHTNLKKRSQQESLTNAQVSNSNDSSPTEPTPNTFKNLHNDSYPSSSTGSEYTTVIVTGDENVVLEDELAFWDADTDLTSANFWLESFMLDISNYGPAEPEFFSTEFDAELWTHDN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01067 224 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Cca04g01067 224 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Cca04g01067 224 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Cca04g01067 224 Gene3D - 69 139 - -
Cca04g01067 224 SMART sant 14 64 IPR001005 -
Cca04g01067 224 SMART sant 67 115 IPR001005 -
Cca04g01067 224 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Cca04g01067 224 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 2 142 - -
Cca04g01067 224 Gene3D - 7 67 - -
Cca04g01067 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca04g01067 224 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca04g01067 224 MobiDBLite consensus disorder prediction 117 157 - -
Cca04g01067 224 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 142 - -
Cca04g01067 224 CDD SANT 17 62 IPR001005 -
Cca04g01067 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01067 Cca-Chr4 11781322 11791416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01067 2 209 MYB Transcription Factor Family AT2G31180 47.596 1.38e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01067 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01067 K09422 - gmx:100778518 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00775 10 8910620 8918162 Cca04g01067 04 11781322 11791416 PCT
Cca04g01067 04 11781322 11791416 Cca10g00776 10 8958568 8961175 PCT