Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01066 ATGAGAACCCCTAACTGTGACAAAAGTGGACTGAGAAAAGGAACATGGACACCAGAAGAAGACATGAAGTTGATTGCCTATGTTAACGAACATGGCCACGAGAATTGGCGCCAACTGCCCAAGCTTGCAGGTCTTGCAAGGTGTGGAAAGAGTTGTAGATTGAGGTGGATGAATTATTTAAGGCCAGGCATCAAAAGGGGGAACTACACTGATGAAGAAGAAGAGACGATTATCAAACTGCACGCAAGGTTTGGCAATAGGTGGTCTATGATTGCCTCTCACTTACCTGGAAGATCAGACAACGAGATAAAAAACCACTGGCACGCTCATCTTAAGAAGCGCTTTCAACACTATTCAGCAACAAACGAAAAAGCTGAATCTTCCCCGTCAAAGCAACAACACTCCCTAGTTGAATCCAATATTCAAGAGAAGGACTCCGTGGAAGTTTCTACAAGCCCTTTCCAAAACAGTTCTCAAGCTACTTCTCCATCACTGAGCGATTTTTTCTGCACAATAACGGAGCCTGCACCGGCCAGTAATGGGAATTTGGTTATTGATGACTTTGCTGATTTTGTGAAGAAAAACACAGATCCTATTGGTGCATATTCCTGGAAAGAACTCTACGAAATTTCCTACATCTCAGCCGAATTTCTCGCGCCTTTTGTGACATGA 672 0.436 MRTPNCDKSGLRKGTWTPEEDMKLIAYVNEHGHENWRQLPKLAGLARCGKSCRLRWMNYLRPGIKRGNYTDEEEETIIKLHARFGNRWSMIASHLPGRSDNEIKNHWHAHLKKRFQHYSATNEKAESSPSKQQHSLVESNIQEKDSVEVSTSPFQNSSQATSPSLSDFFCTITEPAPASNGNLVIDDFADFVKKNTDPIGAYSWKELYEISYISAEFLAPFVT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01066 223 Gene3D - 13 65 - -
Cca04g01066 223 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Cca04g01066 223 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Cca04g01066 223 SMART sant 12 62 IPR001005 -
Cca04g01066 223 SMART sant 65 113 IPR001005 -
Cca04g01066 223 CDD SANT 68 111 IPR001005 -
Cca04g01066 223 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca04g01066 223 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Cca04g01066 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Cca04g01066 223 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca04g01066 223 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 159 - -
Cca04g01066 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Cca04g01066 223 CDD SANT 15 60 IPR001005 -
Cca04g01066 223 Gene3D - 68 142 - -
Cca04g01066 223 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 159 - -
Cca04g01066 223 MobiDBLite consensus disorder prediction 118 142 - -
Cca04g01066 223 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01066 Cca-Chr4 11743741 11746063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01066 2 115 MYB Transcription Factor Family AT3G01140 71.053 5.66e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01066 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01066 K09422 - gmx:106799185 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01066 04 11743741 11746063 Cca10g00775 10 8910620 8918162 PCT