Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01061 ATGAAGGCCAACTGCGAGCTATGCAAGGCTCCGGCCAGGATCTTCTGCGACTCCGACCAGGCAACCTTGTGCTGGTCCTGCGACGCCAAGGTTCACACCGCCAACTTCCTAGTCGCCAGACACTCCCGCACCCTCCTCTGCCGCACCTGCCTCTCTCCCACGCCGTGGAATGCCTCCGGCGCCACCCTCCCCTCCGCCGCCACCCTCTGCCACCTCTGCGCCGCCAATGACCACCAATTCGACAACCAGGTCGTGCCATGGTCCTCCTCCGCCCCGCCGCCGAGCTCCTCCAGCAGCGAATGCTCCTCCTTCACCGCCAGCAAAAACCACCACCAACATGCTTTCGTCTCCGAATCCGAAACGACAGCAACATCCTCGTCCAAACGACACCGCAAGGACGACAATGATGATCCTCGTCCCCAGGTCGTGCCATGGTCCTCCTCCGCCCCGCCGCCGAGCTCCTCCAGCAGCGAATGCTCCTCCTTCACCGCCAGCAAAAACCACCACCAACATGCTTTCGTCTCCGAATCCGAAACGACAGCAACATCCTCGTCCAAACGACACCGCAAGGACGACAATGATGATCCTCGTCCCCAGGAGCGTGAGAAGGGTTGGGCGTCAAAACGTAGGTGCCGTGGGAGGGAGAATCGTCGTGGTTGA 660 0.6167 MKANCELCKAPARIFCDSDQATLCWSCDAKVHTANFLVARHSRTLLCRTCLSPTPWNASGATLPSAATLCHLCAANDHQFDNQVVPWSSSAPPPSSSSSECSSFTASKNHHQHAFVSESETTATSSSKRHRKDDNDDPRPQVVPWSSSAPPPSSSSSECSSFTASKNHHQHAFVSESETTATSSSKRHRKDDNDDPRPQEREKGWASKRRCRGRENRRG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01061 219 MobiDBLite consensus disorder prediction 148 181 - -
Cca04g01061 219 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 76 - -
Cca04g01061 219 PANTHER - 4 76 - -
Cca04g01061 219 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Cca04g01061 219 SMART bboxneu5 1 46 IPR000315 GO:0008270
Cca04g01061 219 MobiDBLite consensus disorder prediction 84 219 - -
Cca04g01061 219 MobiDBLite consensus disorder prediction 84 123 - -
Cca04g01061 219 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cca04g01061 219 PANTHER - 134 209 - -
Cca04g01061 219 PANTHER - 77 137 - -
Cca04g01061 219 MobiDBLite consensus disorder prediction 124 139 - -
Cca04g01061 219 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 134 209 - -
Cca04g01061 219 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 77 137 - -
Cca04g01061 219 MobiDBLite consensus disorder prediction 182 209 - -
Cca04g01061 219 CDD Bbox1_BBX-like 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01061 Cca-Chr4 11677620 11678800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01061 2 75 C2C2-CO-like Transcription Factor Family AT5G54470 58.108 6.40e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca04g01061 zf-B_box 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01061 - - ccaj:109812768 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00767 10 8790392 8791895 Cca04g01061 04 11677620 11678800 PCT