Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01055 ATGGTAAGGAGTGCAACTTGCATGCGCAAGTTAGTGAAAAAGCACAATAAAGGGGATGGATCTAAGTCCCTGGCCGATACACTGGCGAAATGGAAAGAGTATAATGCCTTGCTTGAATCTAGCAACGAGGCTGAGAAGCCAGTTAGGAAGGTTCCTGCCAAGGGATCAAAGAAGGGGTGTATGAAAGGCAAAGGAGGGCCTGAGAATTCGCGCTGTAACTACAGAGGAGTTAGGCAAAGGACTTGGGGGAAATGGGTTGCTGAGATTCGGGAACCGAACAGAGGGAATAGGCTATGGTTGGGTACATTTCCCACTGCCATAAGTGCTGCTCTTGCTTATGATGAAGCAGCAAGGGCAATGTATGGCTCCTGTGCTCGCCTCAACTTTCCCAATGTTCAAGTTTCAACTTTGTCTGAGGAATCTTCAAGAAATTCTCCAGTTGCTAAGCAAACCGGTTCTGCTTTGACGATATTAGAGAGTTCTGAGTTCTTGGTATTGCCGAACAACTCTAGGGCAGACACAGCAGAGGATGATGACATGGAAGGCCTTTCCTTATCCTTAAGTGTGAAACATGAGGAAGGGGAGGGTGAATCCGGGTCCGGTTCTTCGTATCCTTCAGTGTCTTGA 627 0.4753 MVRSATCMRKLVKKHNKGDGSKSLADTLAKWKEYNALLESSNEAEKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAISAALAYDEAARAMYGSCARLNFPNVQVSTLSEESSRNSPVAKQTGSALTILESSEFLVLPNNSRADTAEDDDMEGLSLSLSVKHEEGEGESGSGSSYPSVS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01055 208 MobiDBLite consensus disorder prediction 42 68 - -
Cca04g01055 208 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Cca04g01055 208 Gene3D AP2/ERF domain 73 132 IPR036955 GO:0003700|GO:0006355
Cca04g01055 208 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Cca04g01055 208 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Cca04g01055 208 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Cca04g01055 208 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Cca04g01055 208 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Cca04g01055 208 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Cca04g01055 208 MobiDBLite consensus disorder prediction 172 197 - -
Cca04g01055 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 155 - -
Cca04g01055 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 155 - -
Cca04g01055 208 MobiDBLite consensus disorder prediction 168 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01055 Cca-Chr4 11591826 11592452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01055 10 130 AP2-EREBP Transcription Factor Family AT2G40350 58.400 1.34e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca04g01055 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01055 - - gmx:100783729 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00760 10 8676344 8683627 Cca04g01055 04 11591826 11592452 PCT