Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01050 ATGGAATTGACGAGACCCAGTTATGCTGTTGTTTATGTCATTCTCCTTTGTGCGTTGGCCCAAGGGGGCTCAGAGGGGAAAGAGGGGAAAGAAGAGGAGCATTTTAGAGATGGTGGAGCTTTATCATCATCCATTTATGTGCATGGAATAAAGGTAGAAAATGAATGGAAACAGTGTAGGAAAGAATTGATAGAGAGGATCAATGATGCCAAATATATTGACTTGCATCAGCTGGAAGGGAGCAGTGACGTGAAAACTAAAAAAAACAGCATACATAGAGAAAAAAAGTCTCTGCCTCTCCATATAAAAAGAAAAACTTTGGACTGCATAAGAATGAGTACCACTCCTGCTCCTGTTTCAGAAAAAGGTAGCTCTAGATATTTGTTGACAAAGGACTCTGAATCAACCTTGGGGCTGGAAAGTGGTCATGGGAGAAATTTGATTGCTGATTCACCACATGATCAAATGGCACCAACTCCTTCTAATGCTGAATCACCAACACCAAATCATGGTCCAGCACAATCCAATTCTCAACCATCACCAACACCAAATCATGGTCCAACACCATCTAATTCTCCACCATCACCAACTCCTTCCAAAGGTCTGGATTTACTCCCTCCAGATATGTTTGTGCCATTTCCACCACCACCACCTCGTGCTCCTCCTAAAAGTTCTCGACCTAAAGTATATTCTCCTGTTCCTTCACCACCCAACGATGATGGCAAAACGAAGCAAACTGTTCATTCATCACCAAACAATGATGACAAAAAGAAGCAATCAATTATGATAGCTGCCGCTGTATCAGGATTTATAGTCTTGATAGCCTTGGTCCTCTGCTGTCGAGAGGCCAGAAAGAACAAAGGTGACAGAGAAGACCGCCCTTTGCTCGTGTTAACCTCAAATGATTATTCTGGTGGTTCAAAGAAGATTGTTCGATTGGGAGATGCTGACATGGAAGAATCTGACAATGATAAAACCCCTTCTAATGTTAGAAATTGGTCCGTGAAGTTTGAAAATAAGGATGGAAACAAGGGTGGAAACAAGGGTGGAGATAAGGGTGAAGATAACAATGTCTCACTTGATAAGACAACAGTATCAGAAGCTGTAGGACAAGCACCAGAGCCTGCTAATGGAGAAGCTGCCcctccaccccctggaccaccaccaccaccaccaccacTGGCTCCACGGGCGCCACCGCCTCCTGCTCCTCGTGCGCCGCCACCTCCAAGAGGAGGAGCTCATCCTCCACCCGCTCCTCCCAAACCATTGGCAGGTAAGAAACAAGGACCACTCCATGCTAAAGAAGGAAGTTCAAGTGAAAATGATGCTGCTCCAAAACCAAAACTAAAGCCATTTTTTTGGGATAAGGTTAATGCAAAGCCAGGCCAATCAATGGTGTGGCATGAGATCAGTTCAGGATCATTCGTGATCAACGAGGAAATGATGGAGTCTTTATTTGGCTGCACCAACCAGAACAAGAATGAACGCAAAAAAGATTCACCATCTTTAGATACGTCAGTGCATTATATTCAGATTATTGACCCTAGAAAAGCACAGAACTTATCAATTCTTTTGAGAGCGCTGAATGTGACTACAGCAGAAGTCGTTGATGCTCTTACAGAAGGTAACGAGATTCCTGTGGAGCTCATCCAGACGTTGTTGAAGATGGCACCTACACAAGAAGAGGAACTGAAGCTTAGGCTATTCACAGGACAACTACATGAACTAGGACCAGCAGAGAGGTTTCTCAAAGTGTTGGTTGACATTCCATTCGCTTTCAAACGTCTTGAATGTCTCATGTTCATGTTTATCCTTCAAGAAGAGTTCCAAAGCATTAAGGACTCCTTTGCCACATTAGAGGTTGCGAGCAACGAGCTGAGAAAAAGCCGTCTATTTCTAAAACTCCTAGAAGCAGTTCTGAAAACCGGCAACCGCATGAACTCCGGAACGTACCGCGGTGGCGCACAAGCCTTCCGCCTGGACACCCTCCTGAAGCTGTCGGACGTGAAAGGAACCGACGGCAAGACCACCCTCCTCCACTTCGTGGTGCAGGAGATCATCCGCTCGGAGGGAATCCGCGCCGTGCGATCCGAGAGAGCCACCGAGAGAGCGAGCAGAAGCATCTCCAGCGCGGGAAGCGACTCCGACGAGGGCACGGAGGACACCGAAGAACAATACCGCAGCCTCGGCCTGCAAACGGTCTCGAGCCTCAGCAACGAGCTCAGCGACGTGAAGAAGGCGGCACTGATCGACGGCGACGCGCTGACGACGGCGGTGTCGAAGCTAGGGCACTCCCTGCTGAGGACCGAGGAGTTTCTGAAGACGGACATGAAGAACATCGAGGAGGAGAGCGAGTTCCGGAGCAGCGCGGAGAGCTTCGTGGTGAAGGCGAGGGGGGAGGTGACGTGGCTGGTGGAGGAGGAGAAGAGGATCATGGCGCTGGTGAAGAGTACTGCGGATTATTTCCACGGGAACGCGGGGAAGGACGAGGGTTTAAGGTTGTTTCTCATCGTTCGTGATTTCTTGATCATATTGGACAAGGTGTGCCAGGAGGTCAGAGAGACCACCATCAAGTTGGCAAAGGCTGCCAGTACTATCAGCAAGAAGGACCCCGATGCTGCTTCCGTTGCCTCTTCCCCCGACGCCCATAGCCACCACTCTCCGCCGCCGCAGAAGCCTACTGACCTCCATAGAAGGCTGTTTCCGGCTATTGCAGAGCGGAGAGTGGACTACTCTAGCTCAGATGATGACAACGACGATTGA 2766 0.4779 MELTRPSYAVVYVILLCALAQGGSEGKEGKEEEHFRDGGALSSSIYVHGIKVENEWKQCRKELIERINDAKYIDLHQLEGSSDVKTKKNSIHREKKSLPLHIKRKTLDCIRMSTTPAPVSEKGSSRYLLTKDSESTLGLESGHGRNLIADSPHDQMAPTPSNAESPTPNHGPAQSNSQPSPTPNHGPTPSNSPPSPTPSKGLDLLPPDMFVPFPPPPPRAPPKSSRPKVYSPVPSPPNDDGKTKQTVHSSPNNDDKKKQSIMIAAAVSGFIVLIALVLCCREARKNKGDREDRPLLVLTSNDYSGGSKKIVRLGDADMEESDNDKTPSNVRNWSVKFENKDGNKGGNKGGDKGEDNNVSLDKTTVSEAVGQAPEPANGEAAPPPPGPPPPPPPLAPRAPPPPAPRAPPPPRGGAHPPPAPPKPLAGKKQGPLHAKEGSSSENDAAPKPKLKPFFWDKVNAKPGQSMVWHEISSGSFVINEEMMESLFGCTNQNKNERKKDSPSLDTSVHYIQIIDPRKAQNLSILLRALNVTTAEVVDALTEGNEIPVELIQTLLKMAPTQEEELKLRLFTGQLHELGPAERFLKVLVDIPFAFKRLECLMFMFILQEEFQSIKDSFATLEVASNELRKSRLFLKLLEAVLKTGNRMNSGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRSERATERASRSISSAGSDSDEGTEDTEEQYRSLGLQTVSSLSNELSDVKKAALIDGDALTTAVSKLGHSLLRTEEFLKTDMKNIEEESEFRSSAESFVVKARGEVTWLVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCQEVRETTIKLAKAASTISKKDPDAASVASSPDAHSHHSPPPQKPTDLHRRLFPAIAERRVDYSSSDDDNDD 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01050 921 MobiDBLite consensus disorder prediction 337 358 - -
Cca04g01050 921 MobiDBLite consensus disorder prediction 182 201 - -
Cca04g01050 921 MobiDBLite consensus disorder prediction 372 448 - -
Cca04g01050 921 Gene3D Formin, FH2 domain 446 877 IPR042201 -
Cca04g01050 921 MobiDBLite consensus disorder prediction 870 900 - -
Cca04g01050 921 MobiDBLite consensus disorder prediction 377 425 - -
Cca04g01050 921 Pfam Formin Homology 2 Domain 443 846 IPR015425 -
Cca04g01050 921 PANTHER FORMIN-RELATED 1 919 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca04g01050 921 MobiDBLite consensus disorder prediction 155 181 - -
Cca04g01050 921 ProSiteProfiles Formin homology-2 (FH2) domain profile. 440 872 IPR015425 -
Cca04g01050 921 SUPERFAMILY Formin homology 2 domain (FH2 domain) 383 861 - -
Cca04g01050 921 PRINTS Proline rich extensin signature 167 183 - -
Cca04g01050 921 PRINTS Proline rich extensin signature 187 199 - -
Cca04g01050 921 PRINTS Proline rich extensin signature 216 237 - -
Cca04g01050 921 PRINTS Proline rich extensin signature 380 405 - -
Cca04g01050 921 SMART it6_source 440 861 IPR015425 -
Cca04g01050 921 PANTHER FORMIN-LIKE PROTEIN 1 919 - -
Cca04g01050 921 MobiDBLite consensus disorder prediction 136 257 - -
Cca04g01050 921 MobiDBLite consensus disorder prediction 208 234 - -
Cca04g01050 921 MobiDBLite consensus disorder prediction 314 358 - -
Cca04g01050 921 MobiDBLite consensus disorder prediction 704 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01050 Cca-Chr4 11555516 11562430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01050 442 911 FH2 protein (formin) Gene Family AT5G54650 61.474 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01050 - - gmx:100816477 719.153