Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01048 GGTTTCCTTTGCATGATACTTGCCTGAGGATAGAACATGATTCAAGAATTGATTCATCAACTGAATATGAGTCTCAGGTAAGTATACCCTCTGACAACAACAATGGATTTACACTTGGTGTTCCTGGTGATTGGTTTTCTTCTCAATGGTCATGCAAAGGTGGTGACTGGAAGAGGAATGACGATGCCCAAGATAGATATTGTAATAAAAAACTTGTCCTTAATGATGGGTTTTCATTATGTCAAATGCCCAAATCTGGATGTGAAGATCCTCGTTGGACTCAAAAAGATGACTTGTATTATCCTTCTCACAGTAGGAAGCTTGATCTTCCTCTTTGGGCTTTTTGTGCTGATGAGAGGGTTGACTGCAGTGCTGTGAGCAAACCAGTTCAAACTAAGATAGCTTCTATTAGAGGAGTGAAAGGAAATATTCTTTCAGTGGTAAGGATAAATGCTTGTGTAGCCAAGGACCAGGGATTATTGGTCTCAGAGTCACGTCAAAAGACCCGAGGCAAGGATAAATATCATTCAAGGTCAACTCGGCCTTTCTCTTCAACCAGTGACAGCAAGAGATCATCAACTGAAAAAGATTCTCATTCAAAAGCTTTTAATGATCAACGTTCTCAAGGCTCTTGTAGGAGCATGGATTTCATTAATATTCCTAAAGACCATCTTTCTACTGTTCATGACTTACAATTACATTTGGGCGATTGGTATTATCTTGATGGTTCTGGGCGTGAAAGAGGGCCTTCATCTTTTTCAGATCTACAATGTTTAGTAGACCAAGGAATTGTAAAAAAGTATAGCAGTGTGTTCAGGAAATGTGATAAACTCTGGGTCCCTGTTACCTCTTCTGCTGAAACATATGATGTCAGTCTAAGAATGCAGCAAGAAAGTGGTACAGTGTCTGGTGAATTTTCTGGACATCCATCAAAGCAGATTCATTGTGCTTCATATGGTGAACCTGACTCAAAGTCAAATTTGTTTAACAGCCTTCACCCTCAGTTTGTTGGTTATACTCGTGGGAAGCTACATGAATTAGTGATGAGATCATATAAGAGCCGGGAATTCACTGCTGTTATAAATGAGGTTTTAGATCCCTGGATCAATGCAAGACAGCCAAAGAAAGAAATTGAGAAACAGATATATTGGAAATCTGAAGGTGATGGACATGCTTCCAAAAGAGCTCGGATGCTGGTTGATGACAGTGAAGAAGATAGTGATTTTGAAGATGGCAGCCTGACAATTGAGAAAAATGAATCCACTTTTGAAGCTCTATGTGGTGATGCTACTTTCTCTGGGGAAGGAAGTGGCATTACTGATTCCATGGTTGGAAGCTGGGGTTTATTGGAAGGTCGTTTATTGGCACGAGTATTCCACTGTTTGAGGTCTGATCTGAAGTCACTTGTCTTTGCATCAATGACTTGCAAGCATTGGAGAGCTACTGTAAGGTCTTACAAAGTGGTCTCAAGGCATGTTAATTTGTCATCGTTGGGTCATTCTTGCACTGATTCCATAATGTGGAACATTTTGAATGCTTATGTAAAAGACAAGATTGAATCTATGGTTCTAATGGGTTGCACCAATGTTTCTGCTGGCATGCTTGAGAAAATTCTTCTTTCATTTCCTGGTTTAACTACAGTAGACATTAGAGGGTGCAGCCAGTTTGTAGAGCTGACTCCTAAATTTACCAATGTGAAATGGATCAAGAGCCGGGGTTCACGCTTAACCAAAATTGCAGAGGAGCCACATAAAATCAGAAGCCTTAAACAGATTGTTGATCAAACTTCATCTCTTTCCAAGGTCAGCAGTTTTTGTATTAGGGATGATTTTGGTGAGTTGTCAGATTATTTTGATAGTGTGGATAAGCGAGACACAAAGCAATTTTTCCGTCAAAATTTGTACAAGCGGTCAAAATTATATGATGCTAGAAAGTCCTCTTCCATTCTATCTAGAGATGCGCGTACAAGACGATGGTCAATTAAGAAATCTGAAAATGGTTACAAGATGATGGAGCAATTTCTTGCTTCAAGACTGAGGGAAATTATGAAGGCAAACTCCTGTGACTTTTTTATGCCTAAGGTTGCAGAAATTGAGGCTAAAATGAAAAATGGTTATTACAGTGGGCATGGGTTGAGCTATGTCAAGGAGGACATCAGTAGAATGTGTCGGGATGCAATAAAAGCAAAGAATCGAGGTGATGCTGGTGATATGAATCATGTTATCACATTATTTATTCAGCTTGCATCACGGTTGGAAGGTAATTCCAAGTATGTGAACGACAGAGATGCACTAATGAAGATGTGGGGAAAAGACCCACCATCAACTCTCTGTTCTACTTCCTCTAAGTACAAGAAGAATAGATTGGTATCTGAGAGGAAGCATAGGAATAATGAAACACTAGGTGGTTTGGATAATAATGGGGAATATGCTTCTGATAGAGAAATTAGGAGGCGTTTATACAAGTTGAATAAGAAATTTTTGGACTCAGAGAGTGAGACATCTGATGACTTTGATAGATCATCCGAAGATGGAAAGAGTGATAGCGATGCTGAAACTGCTGATACTGAAAGTGACCAAGATGTCCGTTCAGATAGTCGAATTGGGGAGTCAAGGGGAGATGGATGTTTCACACCTGATAATGGGTTAGATTTTATCACTGATGAGCGTGAATGGGGGGCTCGCATGACGAAAGCAAGCTTGGTTCCTCCTGTTACTCGGAAGTATGATGTCATTGATCAGTATATTATTGTAGCTGATGAGGAGGATGTGCAAAGGAAGATGCGGGTTTCATTACCAGATGACTATGCAGAGAAGCTGAGTGCGCAAAAGAATGGCATTGAGGAGTCTGACATGGAACTGCCTGAAGTCAAGGATTACAAACCTAGAAAACAGCTTGAAAATGAGGTCATTGAGCAAGAAGTTTATGGAATTGATCCCTATACGCACAATCTTTTACTTGATTCTATGCCAGAGGAGTTGGATTGGTCTCTACAAGAGAAGCATTTGTTTATTGAAGACAAGATCCTTCGGATGTTGAATAAGCAAGTTAGGTATTTAACTGGAACTGGAAACACTCCAATGAGCTACCCTTTGCAGCCTGTTATTGAGGAAATTGAAAGGTATGCAGAGGAGCACTGTGATGCGAGAACAGTGAGAATGTGTCAAGGTATCTTAAAAGCCATAGAAGGTCGTCTGGATGATAAATATGTAGCTTACAGAAAGGGGCTTGGTGTTGTTTGCGACAAGGCAGAAGGCTTTGGTGAAGATGATTTTGTTGTGGAGTTTCTAGGGGAGGTGTATCCTGTGTGGAAGTGGTTTGAGAAACAGGATGGGATTCGATCTCTGCAGAAAAATAGTAATGATCCAGCGCCAGAATTCTATAACATCTACCTGGAAAGGCCAAAGGGTGATGCTGATGGGTATGACTTGGTTGTTGTTGATGCCATGCATAAGGCTAACTATGCCAGTCGGATATGTCATTCATGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTTGATGGTCGTTATCAAATTGGTATTTATAGTGTTCGTAAAATTCAACATGGTGAGGAGATCACTTTTGATTATAATTCTGTTACAGAGAGCAAGGAGGAATATGAAGCTTCAGTTTGCTTGTGTGGTAGCCAAGTTTGCCGTGGGAGCTATCTAAATCTGACTGGCGAAGGAGCTTTTGAAAAGGTACTGAAGGAGTGGCATGGAATTCTTGATCGTTATTATTTGATGCTAGAAGCTTGTGAATTAAACTGTGTATCTGAAGAGGACTATAATGACTTGGGAAGAGCTGGTTTAGGCAGTTGTTTGCTTGGAGGCCTGCCAGATTGGCTTGTTGCCTATGCAGCTCGCcttGTGAGATTTATCAATTTTGAAAGAACGAAACTTCCTGAGGAAATTTTAAAGCACAATCTTGAAGAGAAAAGAAAATATTTTTCAGATATCTGTCTTGAAGTTGAAAGGAGTGATGCAGAGGTTCAGGCTGAAGGTGTATACAATCAGAGGCTTCAAAATCTTGCTGTCACTCTTGATAAGGTAAGGTATGTTATGAGATGTATTTTTGGCGATCCACTGAAAGCTCCACCTCCTCTTGAGAAGCTCAGTCCTGAAGCAGTTGTTTCCTTCCTCTGGAAAGGAGAGGATTCATTTGTTGAAGAGCTTCTTCAGTGCCTGGCCACTCATGTTGAAGAGTCTACTTTGAATGATCTCAAGTCCAAAATTAATGCTCGTGATCATTCAAGCCCTGGAGATATTCAAAAGGAGGTTCAAAAATCTCTTTTGTGGTTGAGAGACGAGGTTCGAAATCTTCCTTGTACATACAAAAGTCGGCATGATGCTGCTGCTGACTTAATTCATATTTATGCTTATACCAATCCACTTGACTTAGGTCCTAAGTATGCTGACAAATTGGGAGCAGAGTTTCAGGAGTATCGAAAGATATATGGTGAAAATTATTGTTTAGGGCAACTGATTTTTTGGCATAATCAGAGTAATGCAGAGCCAGATTGTACTCTGGCTAGAGTAAGCAGGGGTTGCTTGTCATTACCAGACATCAGTTCCTTTTATGCCAAAGCTCAGAAGCCTTCAAGGCATCGTGTTTATGGTCCAAGGACTGTGAGATCTATGCTGTCAAGAATGGAGAAGCAGCCCCAGAGACCTTGGCCCAAAGATCGGATATGGTCATTCAAAAGTTGTCCGAAATTTTTTGGCAGTCCAATGTTAGACTCTGTAATTAAGAACTCTCCACTTGACAGGGAGATGGTTCAGTGGTTGAAGCACAGACCTGCGATATTCCAGGCCATGTGGGACCAATGA 4832 0.4067 FPLHDTCLRIEHDSRIDSSTEYESQVSIPSDNNNGFTLGVPGDWFSSQWSCKGGDWKRNDDAQDRYCNKKLVLNDGFSLCQMPKSGCEDPRWTQKDDLYYPSHSRKLDLPLWAFCADERVDCSAVSKPVQTKIASIRGVKGNILSVVRINACVAKDQGLLVSESRQKTRGKDKYHSRSTRPFSSTSDSKRSSTEKDSHSKAFNDQRSQGSCRSMDFINIPKDHLSTVHDLQLHLGDWYYLDGSGRERGPSSFSDLQCLVDQGIVKKYSSVFRKCDKLWVPVTSSAETYDVSLRMQQESGTVSGEFSGHPSKQIHCASYGEPDSKSNLFNSLHPQFVGYTRGKLHELVMRSYKSREFTAVINEVLDPWINARQPKKEIEKQIYWKSEGDGHASKRARMLVDDSEEDSDFEDGSLTIEKNESTFEALCGDATFSGEGSGITDSMVGSWGLLEGRLLARVFHCLRSDLKSLVFASMTCKHWRATVRSYKVVSRHVNLSSLGHSCTDSIMWNILNAYVKDKIESMVLMGCTNVSAGMLEKILLSFPGLTTVDIRGCSQFVELTPKFTNVKWIKSRGSRLTKIAEEPHKIRSLKQIVDQTSSLSKVSSFCIRDDFGELSDYFDSVDKRDTKQFFRQNLYKRSKLYDARKSSSILSRDARTRRWSIKKSENGYKMMEQFLASRLREIMKANSCDFFMPKVAEIEAKMKNGYYSGHGLSYVKEDISRMCRDAIKAKNRGDAGDMNHVITLFIQLASRLEGNSKYVNDRDALMKMWGKDPPSTLCSTSSKYKKNRLVSERKHRNNETLGGLDNNGEYASDREIRRRLYKLNKKFLDSESETSDDFDRSSEDGKSDSDAETADTESDQDVRSDSRIGESRGDGCFTPDNGLDFITDEREWGARMTKASLVPPVTRKYDVIDQYIIVADEEDVQRKMRVSLPDDYAEKLSAQKNGIEESDMELPEVKDYKPRKQLENEVIEQEVYGIDPYTHNLLLDSMPEELDWSLQEKHLFIEDKILRMLNKQVRYLTGTGNTPMSYPLQPVIEEIERYAEEHCDARTVRMCQGILKAIEGRLDDKYVAYRKGLGVVCDKAEGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNSNDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGRYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFEKVLKEWHGILDRYYLMLEACELNCVSEEDYNDLGRAGLGSCLLGGLPDWLVAYAARLVRFINFERTKLPEEILKHNLEEKRKYFSDICLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPLKAPPPLEKLSPEAVVSFLWKGEDSFVEELLQCLATHVEESTLNDLKSKINARDHSSPGDIQKEVQKSLLWLRDEVRNLPCTYKSRHDAAADLIHIYAYTNPLDLGPKYADKLGAEFQEYRKIYGENYCLGQLIFWHNQSNAEPDCTLARVSRGCLSLPDISSFYAKAQKPSRHRVYGPRTVRSMLSRMEKQPQRPWPKDRIWSFKSCPKFFGSPMLDSVIKNSPLDREMVQWLKHRPAIFQAMWDQ 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01048 1609 Gene3D SET domain 1044 1229 IPR046341 -
Cca04g01048 1609 SUPERFAMILY F-box domain 452 502 IPR036047 GO:0005515
Cca04g01048 1609 MobiDBLite consensus disorder prediction 164 207 - -
Cca04g01048 1609 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 1609 - -
Cca04g01048 1609 MobiDBLite consensus disorder prediction 831 881 - -
Cca04g01048 1609 MobiDBLite consensus disorder prediction 831 869 - -
Cca04g01048 1609 SMART set_7 1064 1204 IPR001214 GO:0005515
Cca04g01048 1609 MobiDBLite consensus disorder prediction 773 808 - -
Cca04g01048 1609 Pfam SET domain 1139 1198 IPR001214 GO:0005515
Cca04g01048 1609 SUPERFAMILY SET domain 1073 1221 IPR046341 -
Cca04g01048 1609 Gene3D Ribonuclease Inhibitor 441 602 IPR032675 -
Cca04g01048 1609 ProSiteProfiles SET domain profile. 1059 1198 IPR001214 GO:0005515
Cca04g01048 1609 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1209 1609 IPR045606 -
Cca04g01048 1609 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 1609 - -
Cca04g01048 1609 CDD SET_SETD2-like 1072 1220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01048 Cca-Chr4 11521580 11535454 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca04g01048 SET 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01048 K22748 - gmx:100781921 2937.9