Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01041 ATGTGCAAAGGTGCAGAAGAAAAAAATGTTGCTCCGTTGGCTTCAACAAGAGGTTCAGCATCTTGTGACTTGTGCGGGTTGAAGGCTTCGTTGTATTGTCAAGCGGATAATGCGTATTTATGTGGAAAATGTGATAATTGGGTTCACAAAGCCAATGTTTTGGCCCTTAGACACGTAAGGTGCTTTTTGTGCAACACATGTCAGAACCTTACGCAGAGATATCTGATTGGAGTTTCGGTAGAGATCGTTCTTCCACCCACCGTAAGATGGATTGTGCAGAAACAGGACCTTCCTAACAACAACAATGACAGATATGTTGTTCAAGAACGATAA 333 0.4234 MCKGAEEKNVAPLASTRGSASCDLCGLKASLYCQADNAYLCGKCDNWVHKANVLALRHVRCFLCNTCQNLTQRYLIGVSVEIVLPPTVRWIVQKQDLPNNNNDRYVVQER 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01041 110 Pfam B-box zinc finger 21 58 IPR000315 GO:0008270
Cca04g01041 110 SMART bboxneu5 17 63 IPR000315 GO:0008270
Cca04g01041 110 PANTHER B-BOX ZINC FINGER PROTEIN 29 12 89 - -
Cca04g01041 110 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 12 89 - -
Cca04g01041 110 CDD Bbox1_BBX-like 22 63 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01041 22 85 C2C2-CO-like Transcription Factor Family AT3G21890 56.923 1.51e-20 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca04g01041 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01041 - - gmx:100500322 135.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01041 04 11380545 11381416 Cca04g01041 04 11380545 11381416 ECH