Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01032 ATGGCTGATATAGATCGCTCCTCTGATAATGCTTCTGTTGATTCTATAGAGAAATCCTGCCAGACTTCTGATGTTGAATTTTCTGAAGCTGAGGAAGTCCTTATTGCCATGGTATATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACCGCAGAAGAAATAGAGAAATATTGGACTTCAAGATCCTCAACTAGCCAATGA 222 0.4099 MADIDRSSDNASVDSIEKSCQTSDVEFSEAEEVLIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRSSTSQ 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01032 73 CDD SANT 26 65 IPR001005 -
Cca04g01032 73 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
Cca04g01032 73 Gene3D - 26 68 - -
Cca04g01032 73 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 ISOFORM X1 1 69 - -
Cca04g01032 73 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g01032 73 SMART sant 23 71 IPR001005 -
Cca04g01032 73 ProSiteProfiles Myb-like domain profile. 27 69 IPR001005 -
Cca04g01032 73 SUPERFAMILY Homeodomain-like 26 67 IPR009057 -
Cca04g01032 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01032 Cca-Chr4 11267524 11269036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01032 27 70 MYB Transcription Factor Family AT5G14750 50.000 2.76e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca04g01032 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01032 - - gmx:100500494 131.724