Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01025 ATGTTCCAGTCGAACCTGATGGAGGCGTTGGAGATGGGTCAGAACACTTCTGAGAGTGAGGTTCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCTGGTAGTGAAAACCATGAAGGTGCTTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAACGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTTTTCAAGGAGTGTCCTCACCCAGACGACAAGCAAAGGAAGGAGCTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAACACGAGCGGCATGAGAATACACAGCTTAGAACCGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTATAGGGAGGCTCTCAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTCGATGAACATCACCTAAGGCTTGAAAATGCACGGCTAAGAGAAGAGATCGATAGGATTTCAGCAATTGCTGCAAAGTATGTAGGGAAGCCTGTGGTGAACTATTCAAATATTTCTCCTTCTCTTCCTCCTCGTCCACTAGAACTTGGGGTTGGTGCTGGTTTTGGAGGCCAACCAGGGATTGGTGTGGACATTTATGGTGCTGGTGACCTTCTTAGGTCAATTAGTGGACCCACCGAAGCTGATAAACCAATAATCATAGAGCTAGCCGTTGCAGCTATGGAAGAGCTCATTGGGATGGCACAAATGGGTGAGCCTCTTTGGCTAACTACCCTTGATGGCACTTCCACTATGCTAAATGAGGATGAGTACATCAGGTCCTTCCCTCGAGGAATTGGCCCTAAACCCTCTGGCTTCAAATGTGAAGCTTCTAGAGAAACCGCTGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACCCTGGAGGTTCTATCAACAGGGGTGGCCGGGAACTACAATGGTGCCTTACAAGTGATGACATCAGAACTACAACTACCTACACCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAGCATGCTGATGGGACTTGGGCAGTTGTGGATGTGTCGTTGGATAATTTGCGCCCTAGTCCTTCAGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGATTGAGCACGTGGAAGTGGATGACAGGGGTGTTCATAATCTTTACAAACAGCTTGTTAGCTCTGGACATGCATTTGGAGCAAAACGTTGGGTTGCAACCTTAGATCGACAATGTGAAAGGCTTGCTAGTGCTATGGCAACAAACATTCCCACCGTAGATGTCGGAGTGATAACAAACCAAGAAGGGAGAAAGAGCATGATGAAGCTAGCTGAAAGAATGGTTATAAGCTTTTGTGCCGGTGTGAGTGCTTCCACTGCTCACACATGGACAACACTCTCTGGAACAGGAGCTGATGATGTAAGGGTGATGACCAGAAAGAGTAGTGTAGATGACCCTGGAAGACCTCCCGGCATAGTTCTCAGTGCAGCCACTTCTTTTTGGCTTCCAGTTCCACCCAAACGAGTCTTTGACTTTCTCCGTGACGAAAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACACATAGCAAATGGAAGAGATACTGGAAACTGTGTCTCTCTACTACGAGTAAATAGTGCGAATTCAAGCCAGAGCAACATGTTGATATTGCAAGAGAGTTGCACCGATACAACCGGGTTTGCTATTCTGCCAGATGGGACAACAACGCATGGTAGTGGTATTGGTGAATCTGGACCTGGTGGATCTCTTCTTACTGTTGCCTTTCAAATATTGGTGCTTAAGCTTCAAGACTTTGGATTCAGTGTGTTTGAAAGAAGGGATGAAAGGTTGTGGAGATTAAATGAAAAGGTGGTGAGGATCTTCGGGTTACATTACAAAGATTAG 2082 0.4625 MFQSNLMEALEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPGIGVDIYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPSGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGFAILPDGTTTHGSGIGESGPGGSLLTVAFQILVLKLQDFGFSVFERRDERLWRLNEKVVRIFGLHYKD 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01025 693 Pfam START domain 246 465 IPR002913 GO:0008289
Cca04g01025 693 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Cca04g01025 693 SMART HOX_1 53 116 IPR001356 GO:0003677
Cca04g01025 693 Coils Coil 118 138 - -
Cca04g01025 693 MobiDBLite consensus disorder prediction 20 53 - -
Cca04g01025 693 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Cca04g01025 693 CDD START_ArGLABRA2_like 240 464 - -
Cca04g01025 693 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Cca04g01025 693 CDD homeodomain 55 113 IPR001356 GO:0003677
Cca04g01025 693 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 625 659 - -
Cca04g01025 693 MobiDBLite consensus disorder prediction 1 19 - -
Cca04g01025 693 Gene3D - 41 129 - -
Cca04g01025 693 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 625 IPR042160 -
Cca04g01025 693 SUPERFAMILY Bet v1-like 484 629 - -
Cca04g01025 693 ProSiteProfiles START domain profile. 236 468 IPR002913 GO:0008289
Cca04g01025 693 SUPERFAMILY Bet v1-like 236 467 - -
Cca04g01025 693 SUPERFAMILY Homeodomain-like 44 112 IPR009057 -
Cca04g01025 693 SMART START_1 245 465 IPR002913 GO:0008289
Cca04g01025 693 MobiDBLite consensus disorder prediction 1 63 - -
Cca04g01025 693 Gene3D - 292 462 IPR023393 -
Cca04g01025 693 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 625 659 IPR042160 -
Cca04g01025 693 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 10 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01025 Cca-Chr4 11154935 11160263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01025 24 658 Homeobox Transcription Factor Family AT1G05230 75.821 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca04g01025 START 1.3e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01025 K09338 - gmx:100782260 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01025 04 11154935 11160263 Cca04g01025 04 11154935 11160263 ECH
Cca10g00717 10 8118152 8125606 Cca04g01025 04 11154935 11160263 PCT