Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01022 ATGGTTATGGGGAGAACATTGTTCCTCTTGGTTTTCTGCTTGTGGATTCCCTTGGAAGTGTTGGGGAGGAAAGAGCCTTCTTCACCTACCACTGTGAATTCCACTGTTTCTTCGAGACCCAAGGTTGTGAAATTTGGGGCCCTCTTTACTGTGAACTCTGTCATTGGGAGATCGGCCTTACCTGCAATTTTGGCTGCCGTTCGTGATGTTAATTCTATCAGGACCATTCTCCCTGGCATTGATCTGCAAGTTATTTTACATAATACAAATTGCAGTGAGTTTCTTGGAACAATGGAAGCTCTGCAGCTGATGGAGAATGATGTGGTTGCTATTGTTGGTCCACTATCATCTGGAATAGCTCATGTCATCTCTCATGTTGTAAATGAACTCCATGTGCCTCTTCTATCGTTTGGGGCAACTGATCCCACTCTATCTTCTCTACAATACCCATATTTTGTCCGCACTACCCAGAACGACCATTTTCAGATGTTTGCAGTTGCAGACTTTATTGATTATTACAGATGGAAGGAGGTAATAGCCATTTATGTAGACAATGATAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGCGCCAAGATCTCTTACAAGGCTGCTTTCACTCCTGGTGCCACAGAAAGTGATATCAGTGACTTGTTAAATGAAGTTAACTTAATGGAATCGCGAGTCTATGTTCTTCATGTGAATCCTGATTCAGGTTTAGCTGTTTTCTCTATTGCCAAGAGGCTAAGAATGATGACCAGTGGCTATGTTTGGATTGCAACACATTGGCTTCCTTCAGTGCTGGATTCCTTTGATACACCTGACTCTGACACAATGGATCTCTTACAAGGGGTTGTGGCCTTTCGCCATCACATTCCTGATACTGATCTCAAAAGGAGTTTGCTCTCCAGGTTGAAAAGCCAAAGAGACAGGGAGAGCGTTAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCGTGCCCTTGATGCTTATCTCAATGAAGGTGGAAATATATCTTTCTCAAGCGACCCTAAGTTGCATGACACAAATGGAAGCTTGTTGCAGCTATCGTCACTTCGTACCTTTGATGGTGGTCCAGAATTTCTCCGGACAATTTTGGGAATTAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATTTAGTTCATCCAGCTTATGATATTCTAAATATTGGTGGTACTGGATCCCGCAGAATTGGTTATTGGTCTAATCACACTGGTCTTTCAGTTATAGCTCCTGAAAGTTTATATGAGAAAAAATCATCCAACACGTCTTTGATGAGCAATCAACAAGTGTACAGTGTGATATGGCCTGGTGAGACAACAACTACGCCAAGGGGATGGGTGTTTCCAAACAATGGACGGCCACTAAGGATAGCAGTGCCTAACCGAGTGAGCTACAAGGACTTTGTTGCTAAAGACAAGGACCCCCCAGGGGTACATGGCTATTGTATAGATGTCTTCGAAGCAGCCATAAATTTGTTGTCTTATCCCGTCCCACGACAATATATGCTATATGGAAATGGTAAAAGGAATCCTGACTACAACGAGCTTGTGGAACAGGTTGCACAGAATAACTTCGATGCAGTTGTTGGAGATGTTGCAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTTATGCCATCAGGGCttgttgttgttgttcctgttgtGGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTACTCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTCGTTGGAACTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAGTTCCGTGGTTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGGCGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGATGGAATTGACAGCTTGATCTCTAGTACTCAACCTATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGATGAGCTCAACATAGCTGAATCTAGGATAGTTACGTTGAAAACCATGGAGGAATATGTTGATGCCCTTCAGCGTGGCCCTAAAGGTGGAGGGGTTATGGCAATTGTTGATGAGCTTCCTTATATTGAGGTCTTGATGTCCAGCACTAACTGTAAGTTCAGAAATGTTGGGCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCTCTTGCTATTGACTTGTCAACTGCCATTCTTCAACTCTCCGAGAATGGAGACCTGCAAAAGATTCATGACAAATGGCTTAGTAAAGAGGAGTGTACAACCGTTGCTAATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTGCCATTGCTCTCATTGTTTTCTTTATTAGAGTGTATTGTCAATACAACAAATTCAGCGCTGAGCCTGGGAAGATTGATGAGGAAATTCAACCAGTCAAGTCTAGACGTCCTAGCAGAACATCTAGCCTCAAGAACTTGATAGAATTTGTAGATAAAAGGGAGTCAGAAATCAAAGGGAAAAACAAAAAAAGGAGACACAGCCAGAACTTTGATGAACATTCGGTTACATCACCTAGTTAA 2793 0.4221 MVMGRTLFLLVFCLWIPLEVLGRKEPSSPTTVNSTVSSRPKVVKFGALFTVNSVIGRSALPAILAAVRDVNSIRTILPGIDLQVILHNTNCSEFLGTMEALQLMENDVVAIVGPLSSGIAHVISHVVNELHVPLLSFGATDPTLSSLQYPYFVRTTQNDHFQMFAVADFIDYYRWKEVIAIYVDNDNGRNGISVLGDALSKKRAKISYKAAFTPGATESDISDLLNEVNLMESRVYVLHVNPDSGLAVFSIAKRLRMMTSGYVWIATHWLPSVLDSFDTPDSDTMDLLQGVVAFRHHIPDTDLKRSLLSRLKSQRDRESVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLHDTNGSLLQLSSLRTFDGGPEFLRTILGINFTGVSGQIEFDMDKNLVHPAYDILNIGGTGSRRIGYWSNHTGLSVIAPESLYEKKSSNTSLMSNQQVYSVIWPGETTTTPRGWVFPNNGRPLRIAVPNRVSYKDFVAKDKDPPGVHGYCIDVFEAAINLLSYPVPRQYMLYGNGKRNPDYNELVEQVAQNNFDAVVGDVAIVTNRTRIVDFTQPFMPSGLVVVVPVVEQKSSPWSFLEPFTTQMWCVTGAFFLFVGTVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIDGIDSLISSTQPIGIQDGSFARKYLIDELNIAESRIVTLKTMEEYVDALQRGPKGGGVMAIVDELPYIEVLMSSTNCKFRNVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHDKWLSKEECTTVANSNKLALTSFWGLFLICGIACAIALIVFFIRVYCQYNKFSAEPGKIDEEIQPVKSRRPSRTSSLKNLIEFVDKRESEIKGKNKKRRHSQNFDEHSVTSPS 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01022 930 Pfam Bacterial extracellular solute-binding proteins, family 3 535 822 IPR001638 -
Cca04g01022 930 PANTHER GLUTAMATE RECEPTOR 3.4 32 915 - -
Cca04g01022 930 Gene3D - 475 589 - -
Cca04g01022 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Cca04g01022 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Cca04g01022 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Cca04g01022 930 SUPERFAMILY Periplasmic binding protein-like II 457 823 - -
Cca04g01022 930 MobiDBLite consensus disorder prediction 905 930 - -
Cca04g01022 930 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Cca04g01022 930 Gene3D - 158 431 - -
Cca04g01022 930 Gene3D - 713 826 - -
Cca04g01022 930 PIRSF IGluLR_plant 1 929 IPR017103 -
Cca04g01022 930 Pfam Ligand-gated ion channel 823 851 IPR001320 GO:0015276|GO:0016020
Cca04g01022 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 915 - -
Cca04g01022 930 CDD GluR_Plant 478 821 - -
Cca04g01022 930 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Cca04g01022 930 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Cca04g01022 930 Gene3D - 590 712 - -
Cca04g01022 930 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Cca04g01022 930 Gene3D - 62 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01022 Cca-Chr4 11127795 11133797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01022 39 788 Ion Channels AT1G05200 68.400 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01022 K05387 - gmx:100802782 1589.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01022 04 11127795 11133797 Cca04g01022 04 11127795 11133797 ECH
Cca10g00715 10 8105180 8111279 Cca04g01022 04 11127795 11133797 PCT
Cca04g01022 04 11127795 11133797 Cca10g00714 10 8084995 8091190 PCT