LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g01007	ATGGGGGTGATAAAGGGTGCCATTGGAGATGCAACTTTGACATCCATATGGGTTTTCATCATCTCAACTTTGAGGATCGTAGCCACTGAGGTGGCACTTCTCCTTGGTCTCCAACCCTTTTCACTTTTAGGCCTCTTCATAACAACCATCCTAAACACCCTCTATGTCCTCACCATAAGCTTCATTGGGAGGGTCTTAGGTGGTGCTAGCTTCAACCCTTCAACAAGTGTTTCCTTCTACACTGCAGGGTTGAGGCCAGACTCATCTCTTGCATCCATGGCTGTGAGGTTCCCTGCTCAGGCTGCTGGTGGTGCTGTTGGTGCCAAGGCTCTCCTCATGGTGGTGCCACCTCAGTACAAGGACATGCTGAAGGGTCCTTTCTTGAAGGTGGACTTGCACACTGGTGCTGTAGCAGAAGGAGTGTTGACTTTCACTCATAACTTGGCTATACTCTTTGTCATGCTTAGGGGTCCTAAGAACCCTTTTTTGAAAGTTTATTTGCTCTCTGTGGCTACTGTGGCTTTGGCTATTCCTGGTGCTGGCTTCACTGGGCCTGCCATGAACCCTGCCAATGCCTTTGGATGGGCCTTTGTGAACAACAGGCACAACACTTGGGAGCAGTTTTATGTCTATTGGATATGCCCTTTTGTAGGGGCTAGTTTGGCTGCTTTTATCTACAGGGTTAAGTTTATGTCACCAATCAAGCAGAAGAAAGCTTGA	720	0.4819	MGVIKGAIGDATLTSIWVFIISTLRIVATEVALLLGLQPFSLLGLFITTILNTLYVLTISFIGRVLGGASFNPSTSVSFYTAGLRPDSSLASMAVRFPAQAAGGAVGAKALLMVVPPQYKDMLKGPFLKVDLHTGAVAEGVLTFTHNLAILFVMLRGPKNPFLKVYLLSVATVALAIPGAGFTGPAMNPANAFGWAFVNNRHNTWEQFYVYWICPFVGASLAAFIYRVKFMSPIKQKKA	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g01007	239	SUPERFAMILY	Aquaporin-like	23	232	IPR023271	-
	Cca04g01007	239	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Cca04g01007	239	PRINTS	Major intrinsic protein family signature	92	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Cca04g01007	239	PRINTS	Major intrinsic protein family signature	169	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Cca04g01007	239	PRINTS	Major intrinsic protein family signature	209	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Cca04g01007	239	Pfam	Major intrinsic protein	44	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Cca04g01007	239	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	1	239	-	-
	Cca04g01007	239	PANTHER	AQUAPORIN SIP1-1	1	239	IPR044222	GO:0015250
	Cca04g01007	239	Gene3D	Glycerol uptake facilitator protein.	2	237	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g01007	Cca-Chr4	10943300	10944491	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g01007	1	230	Major Intrinsic Protein MIP	AT3G04090	44.783	1.48e-58	184

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g01007	K09875		-	gmx:100797126	383.645