Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01001 ATGGAGTGGCAAAGAGGCCACACCATAGGCCATGGCTCATCCGCCACCGTCTACACCGCCACATGCCACGGCGTTGTCTTCGCCGTGAAGTCGTCGGAGCTGTCACAATCAGAGCCTCTACAAAAGGAGCAAAAAATTTTATCCTCTCTAAGTAGTCCTTATGTGGTTACATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCCCTTTTTCAATCTCTTCATGGAGTACATGCCCTTTGGTACCCTTGCACATACTTCTCGTAATCACGGTGACCGACCTGAAGAGCCGGCCATCGCATGTTATACGAGACAAATTGTGCAAGGGCTAGAGTACTTGCATTCAAGAGGGTTGGTGCATTGTGACATCAAGGGTTCCAACATCTTAATTGGTGAAGGTGGAGCCAAAATTGGTGACTTTGGATGTGCCAAGAGGGTGGCGGACGAGGCAGCGGCGATCAGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGATCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACTTTGATTGAAATGGCCACTGGTGGTGCACCATGGCCTAATGTGGCAGACCCTTTTTCTGTGCTTTATCATATTTCATATTCTAGTGAAGTGCCTCCAATTCCTTCTTTTCTGTCCCATGAAGCAAGGGATTTCTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGACGGCTAGTGAACTCTTGAAGCATCCATTTCTTGGGGAATTATGTTTCAATAAGGAAGTTTTGGGGTCTAATTCTTCAAGTTCCCCGACTAGTGTTCTTGAGCAAGGCTTTTGGAGTTGTGTGGAAGAATCAGAAAGTTTTGGCAATTTGGTTCACAACACAAGTAGTTTTGAAATTTCGGCTTGTGGGAGGGTCAGAATGCTGGCTCTCTGTTCAGGGGTGCCCTGTTGGGCACGACatggtgatgatgatgatgaGAATTGGATCACAACCAGAGAAAATCCAACAGAAAATTAG 1017 0.4749 MEWQRGHTIGHGSSATVYTATCHGVVFAVKSSELSQSEPLQKEQKILSSLSSPYVVTYKGCDITMENNKPFFNLFMEYMPFGTLAHTSRNHGDRPEEPAIACYTRQIVQGLEYLHSRGLVHCDIKGSNILIGEGGAKIGDFGCAKRVADEAAAISGTPMFMAPEVARGEDQGCASDIWSLGCTLIEMATGGAPWPNVADPFSVLYHISYSSEVPPIPSFLSHEARDFLGKCLRRNPQERWTASELLKHPFLGELCFNKEVLGSNSSSSPTSVLEQGFWSCVEESESFGNLVHNTSSFEISACGRVRMLALCSGVPCWARHGDDDDENWITTRENPTEN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01001 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Cca04g01001 338 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 335 - -
Cca04g01001 338 Pfam Protein kinase domain 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01001 338 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01001 338 CDD STKc_MAPKKK 2 251 - -
Cca04g01001 338 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01001 338 SUPERFAMILY Protein kinase-like (PK-like) 3 283 IPR011009 -
Cca04g01001 338 Gene3D Transferase(Phosphotransferase) domain 1 1 253 - -
Cca04g01001 338 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Cca04g01001 338 PANTHER MAP KINASE KINASE KINASE 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01001 Cca-Chr4 10883991 10885467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01001 1 334 MAP Kinase Kinase Kinase AT1G05100 50.427 4.91e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca04g01001 Pkinase 4.9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01001 K20716 - gmx:100819665 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01001 04 10883991 10885467 Cca04g01001 04 10883991 10885467 ECH
Cca04g01001 04 10883991 10885467 Cca08g02073 08 53715191 53718597 ECH
Cca10g00700 10 7843439 7844681 Cca04g01001 04 10883991 10885467 PCT