Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01000 ATGGTTAGAGGTGGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAATAAGCCAATTGTTCTCAACTCTTTCCCTACAGAAGACACAAACCACCCCAAGTGGAAACTTAGTAATAACATGGACGCCACCAAACCCTCTTCTTCACCCTTCCAAGTCAACCTTAGCTCTTCCTCAAACAACCATGCCTCCAATTCTCCTCCTTCTCACAACCACATGAGAACCGAGATGGACTTCTTCTCCGACAAAAACATCCTCAAAGATGACAACGTTCTCGCTTCTGCTTCTGTACCTGACAATGATCATCATCGTTCCACCACTCCACCGACGTTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAACACTAGCAGCGATCAATCTATGGTGGATGATGAGATATCACCGAATTCAGAAGACAAAAGAACTAAGAATGAGCTGGCTGTTCTTCAAGCTGAGCTTGAAAGAATGAAGAGGGAGAATCAAAAGCTGAGGGACATGCTTGATCAGGTTAACGCGGATTACAATGCACTTCAGATTCATTTTATGGATTTGATGCAGCAGCAGAAGGCTGAGGAAGTTGGAGAACAAGAAGTGTTTGGTGGAAAGCTAGAAGAGAAGAAGCAAGGTGAGAGTGGTGGAGTATTGGTGCCAAGGCAGTTTATGGATCTTGGGTTGGCTACTAATGCTGACACTGATGAGCCTTCGTCTTCATCAGGGGGAAGAAGTCAAGATAGATCAGGATCATCTGGGAATAACAACATAGAAGTGGCTTCCAAGGAATTAGGGACTAGTAAGAATGATGAAGGAGTTGTGTATGAACAAGAGAAGAAGGAATATGGTAGAGTGAATGAAAGAGAGGATAGTCCCTCAGGTCATGCTTTTGCTGGTGATAATAAAATTCCAAGGCTCAGTCCTCCAAAGAATAATAATAATGTTGATCAGGCTGAGGCTACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCTGAGGCACCCATGATCACTGATGGGTGCCAGTGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACTATGGCTGCTGGTTGTCCAGTTAGAAAACAGGTGCAAAGGTGTGCTGAAGATAGAACAGTCCTTATCACAACCTATGAAGGCAACCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAGACCACTTCCTCAGCAGCAAGAATGCTGCTTTCAGGGTCAATGTCAAGTGCTGACAGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCTTCAAGCATGGCTACTATCTCAGCATCTGCTCCATTTCCAACTGTCACATTGGACCTAACTCAATCTCCAAACCCTCTACAGTTCCCAAGGCATCCAAACCAGCTTCAAATTCCCCTCCAAGGCCTCCCTCAGAATTTTGCAAGCTCCTCAGCATCTTTAATGCCTCAGATATTTGGACAAGCCCTTTACAACCAATCAAAGTTTTCTGGTCTTCAAATGTCACATGATGCAGACCCTTCACAGTTTGGTGGCCACTCTCAGCAGGTTCCACCACACCTTGCTGACACAGTTGGTGCTGCCATTGCTGCTGACCCAAACTTCACTGCAGCTTTGGCAGCTGCTATCACTTCCATTATTGGTGGTGCTcagcaacaacacaacaGAAAGTTTTACTATTTGACATAG 1743 0.4492 MVRGGGLSMDSDPIGSFFLHNKPIVLNSFPTEDTNHPKWKLSNNMDATKPSSSPFQVNLSSSSNNHASNSPPSHNHMRTEMDFFSDKNILKDDNVLASASVPDNDHHRSTTPPTLEFKVNTGLNLLTTNTSSDQSMVDDEISPNSEDKRTKNELAVLQAELERMKRENQKLRDMLDQVNADYNALQIHFMDLMQQQKAEEVGEQEVFGGKLEEKKQGESGGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSSGNNNIEVASKELGTSKNDEGVVYEQEKKEYGRVNEREDSPSGHAFAGDNKIPRLSPPKNNNNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIPLQGLPQNFASSSASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGGHSQQVPPHLADTVGAAIAADPNFTAALAAAITSIIGGAQQQHNRKFYYLT 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01000 580 MobiDBLite consensus disorder prediction 237 268 - -
Cca04g01000 580 PANTHER OS05G0567200 PROTEIN 62 572 - -
Cca04g01000 580 MobiDBLite consensus disorder prediction 128 149 - -
Cca04g01000 580 ProSiteProfiles WRKY domain profile. 338 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca04g01000 580 MobiDBLite consensus disorder prediction 29 76 - -
Cca04g01000 580 MobiDBLite consensus disorder prediction 277 300 - -
Cca04g01000 580 SMART WRKY_cls 343 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca04g01000 580 Pfam WRKY DNA -binding domain 345 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca04g01000 580 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 62 572 IPR044810 GO:0003700
Cca04g01000 580 MobiDBLite consensus disorder prediction 29 77 - -
Cca04g01000 580 SUPERFAMILY WRKY DNA-binding domain 336 404 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca04g01000 580 MobiDBLite consensus disorder prediction 235 319 - -
Cca04g01000 580 Gene3D WRKY domain 328 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca04g01000 580 Coils Coil 147 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01000 Cca-Chr4 10871778 10874870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01000 80 567 WRKY Transcription Factor Family AT1G62300 49.903 1.64e-132 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca04g01000 WRKY 4.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01000 - - gmx:100797998 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01000 04 10871778 10874870 Cca04g01000 04 10871778 10874870 ECH
Cca04g01000 04 10871778 10874870 Cca08g02071 08 53686395 53689032 ECH
Cca10g00698 10 7821026 7823799 Cca04g01000 04 10871778 10874870 PCT