Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00995 ATGTTCAACGGTATGATGGATCCCGATTTGATGAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAGCAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGCGCTGAGGACTTTAAGCTTGCTGCTGAACAGTTAAAGCATACCCGTCCAGAAGAAATGGCTGAGATTGGTGAAAAGATGGCTAATGCATCCCCTGATGAAGTGGCTGCAATGCGTGCCCGTGTTGATGCTCAGGTCAAATATCAGTTGAGTGCGGCTGAGATGTTGAAGAAACAGGGAAATGAATTTCATAGTCAAGGAAGGTACAATGATGCTCTGAAAAAGTATATGCTTGCTAAGGAAAACATTAAAGAGATCCCATCTTTTCAAAGTAGAAAGCTTCTTTTGGCATGCTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAATATGATGAATGCATAAAGGAAGGTTCTGAGGTTTTGGCATATGATGCGAAGAACCTTAAGGCTCTATATCGAAGAGGTCAAGCATATAAGGAACTAGGTTTACTAAAAGATGCTGTTTCTGATCTGAGCAATGCACTTGAAGTGTCCCCTGACGATGATACAATCGCAGAGCTTTTACGGGATGCCAAGGAAAAATTGACAATCGATGGTGGTGGGCATGTGCCTGGAAGACTAGTAATTGAAGAAATAACTGAAGAAGTTGAGAACGTGCCTTCTGGAAACAACAGTAGCTCTTCTTTAGAACAAACAGTGGTTCAGCCCAAAAAATCTGGTGACTCCTCTAGGAACTTTAGTACAACTAACAATGGAATTCCAAGAACAACTACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGATCATTCCAAAACTTCATTTCAAATACTGATCCTGCCATGCTGGCTTCTCTGAACACCGGACAATTCAAAGATGTGTCTCCAGATATGATTAAAACTACCTCTGATATGATTAGTAAGATGTCACCCGAGGAACTTCAAAAAGTACTTGACATGGCTTCTTCATTTCAAGGGGACAGCCCATTTTTAAGAGGAGGTTCCCCTGATTCTTCTTTCAACCCTGGAACCGGATCAATTCCTCCCAATGTAACACCTCACATGTTTAAAGCAGCAAGTGATATGATTAATAAAATGCCATCAGATGACCTTAAGAGGATGTTTGAAATGGCATCTTCACTGAAAGGGAAAGAATCTATTCCATCAGTAGCAGCAGATGCTAATGTGTTTTCACTGAATGAAAGAAATGTTTCCCGGTCAAACTTACCATCATCAAGTACTAATGAAACTACTTCTTTTGGAGAATCAAGTTCTCATAATGTTTTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTTCCTTCCTCAAGTACTGATCTAGAAGAACAGATGAGAAACCAGATGAAAAATCCAGCTATGCGGCAGGTATGTGTTTGTATTGCTTGTTAA 1515 0.4099 MFNGMMDPDLMRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSAEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRARVDAQVKYQLSAAEMLKKQGNEFHSQGRYNDALKKYMLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVSDLSNALEVSPDDDTIAELLRDAKEKLTIDGGGHVPGRLVIEEITEEVENVPSGNNSSSSLEQTVVQPKKSGDSSRNFSTTNNGIPRTTTDSLDALKKDPEAVRSFQNFISNTDPAMLASLNTGQFKDVSPDMIKTTSDMISKMSPEELQKVLDMASSFQGDSPFLRGGSPDSSFNPGTGSIPPNVTPHMFKAASDMINKMPSDDLKRMFEMASSLKGKESIPSVAADANVFSLNERNVSRSNLPSSSTNETTSFGESSSHNVFSNMRNASQSNFPSSSTDLEEQMRNQMKNPAMRQVCVCIAC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00995 504 MobiDBLite consensus disorder prediction 250 290 - -
Cca04g00995 504 Gene3D Tetratricopeptide repeat domain 89 230 IPR011990 GO:0005515
Cca04g00995 504 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Cca04g00995 504 PANTHER OUTER ENVELOPE PROTEIN 61 58 498 - -
Cca04g00995 504 MobiDBLite consensus disorder prediction 439 485 - -
Cca04g00995 504 MobiDBLite consensus disorder prediction 250 292 - -
Cca04g00995 504 SUPERFAMILY TPR-like 96 226 IPR011990 GO:0005515
Cca04g00995 504 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 58 498 - -
Cca04g00995 504 SMART tpr_5 103 136 IPR019734 GO:0005515
Cca04g00995 504 SMART tpr_5 146 179 IPR019734 GO:0005515
Cca04g00995 504 SMART tpr_5 180 213 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00995 Cca-Chr4 10802734 10808171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00995 93 227 Calmodulin-binding Proteins AT5G48570 34.043 1.55e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00995 - - gmx:100800315 834.328