Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00993 ATGTCTACAACATCGGATTCCAATGCCACTGTAGTGGAAGAGTGTCGTGGCGTTCTTCACGTTTATAGCGACGGTTCCATAGTACGCTCCTCAGTTTCAAGCTTCAACGTTCCTGTCCACGACGAGGGCACCGTTTTATGGAAAGACGTCGTTTTCGACTCTTCCCATGATCTTCAGCTTCGGCTCTACAAGCCAGCCGACTCAGCCGCCTCCAACCTTCCCGTTTTCTACTTCTTCCACGGCGGCGGCTTCTGCATCGGCTCACGCGCTTGGCCTAACTGGCTAAATTATTGCTTTCGGCTCGCTTCTCAGCTTCGAGCCGTAATCATTGCCCCGGATTATCGGCTCGCTCCTGAGAATCGGCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCTTCCCGGGTGGGGAGCCGTAATCATTGCCCCGGATTATCGGCTCGCTCCTGAGAATCGGCTCCCAGCCGCAATCGAAGACGGCTTGGCGGCTCTTAAGTGGCTTCAAACTCAAGCCGTGAGTAATGAGCCGGACCCCTGGTTGAGCCACGTGGCTGATTTTAGCCGCGTGTTCATTTCGGGTGACTCGGCTGGAGGAAACATAGCTCATCATTTAGCGGCTCGGCTTGGGTGCGGCTCGCCCGAGCTGGCTCCGGTTCGGGTGAGGGGCTATATTCTGTTGGCCCCTTTCTTTGGTGGAACAATCCGAACCAAGTCGGAAGCTGAAGGACCAAAACATGCTTTTCTAAATTTAGAACTCATTGATAGGTATTGGAGGCTTTGTGTACCCGTTGGGGCCACTAGTGATCACCCTCTCGTGAATCCGTTTGGGCCGAATAGTAAGAGCCTTGAAGGAATTAATCTAGATCCAATTTTAGTGGTGGCTGCTGGAAGTGATTTGCTTAAAGACAGGACAAAGGATTACGCAAGGAGGCTTAAGGAGTGGGGTAAAGATATAGAGTATGAAGAATTTGAAGGACAACAACATGGGTTCTTTTCTACTGATCCCAACTCTGAATCATCCAACAAGTTGATGATGGTTATCAAACAATTCATGGAGAAGCATCTAGGGAAAGTTTGA 1392 0.3851 MSTTSDSNATVVEECRGVLHVYSDGSIVRSSVSSFNVPVHDEGTVLWKDVVFDSSHDLQLRLYKPADSAASNLPVFYFFHGGGFCIGSRAWPNWLNYCFRLASQLRAVIIAPDYRLAPENRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPGWGAVIIAPDYRLAPENRLPAAIEDGLAALKWLQTQAVSNEPDPWLSHVADFSRVFISGDSAGGNIAHHLAARLGCGSPELAPVRVRGYILLAPFFGGTIRTKSEAEGPKHAFLNLELIDRYWRLCVPVGATSDHPLVNPFGPNSKSLEGINLDPILVVAAGSDLLKDRTKDYARRLKEWGKDIEYEEFEGQQHGFFSTDPNSESSNKLMMVIKQFMEKHLGKV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00993 463 Pfam alpha/beta hydrolase fold 77 122 IPR013094 GO:0016787
Cca04g00993 463 Pfam alpha/beta hydrolase fold 242 436 IPR013094 GO:0016787
Cca04g00993 463 PANTHER CARBOXYLESTERASE 15-RELATED 8 122 - -
Cca04g00993 463 Gene3D alpha/beta hydrolase 19 126 IPR029058 -
Cca04g00993 463 PANTHER CARBOXYLESTERASE 15-RELATED 242 457 - -
Cca04g00993 463 Gene3D alpha/beta hydrolase 240 462 IPR029058 -
Cca04g00993 463 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 294 306 IPR033140 -
Cca04g00993 463 Coils Coil 122 122 - -
Cca04g00993 463 SUPERFAMILY alpha/beta-Hydrolases 239 461 IPR029058 -
Cca04g00993 463 PANTHER ARYLACETAMIDE DEACETYLASE 242 457 - -
Cca04g00993 463 PANTHER ARYLACETAMIDE DEACETYLASE 8 122 - -
Cca04g00993 463 SUPERFAMILY alpha/beta-Hydrolases 34 122 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00993 Cca-Chr4 10782921 10784448 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00993 242 457 Carbohydrate Esterase AT3G63010 37.788 1.05e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00993 - - gmx:100791656 393.275