Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00991 ATGAGTGATATAAGGAAGTGGTTCATGAAATCGCATGACAAGGGGAACAATGCCGCTGCCTCCAAGTCTTCCAATCAACCCAAGCCTTCTTCGGATAAACCCCAGACCGAGAAAACGGTGCCTGGAGGTCAGGAAAGTTCAGGGAGGAGGGTAACTAGCAAATATTTTAATGCGAACAAGCAAAAGGTGAAAGATGAGAAAGAAACGCAGGAGCTCCCTGCTAAAAGGAAGAATATGAAGGACAGTGAGGATATGCCGGAGCCAAAGAAAATTCATGAAGATGATGGAGATGACCCTGTCTTGCTCACTAAAAAAAAGAAGTTAGCCGCTGCCACTCCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCCAGAAATCTGTAGATTTGGAAGAAAGTGATGAAGATGATGACAAAGATGTCGTGTCTGCTGCTAAATCTGGTGGAAGGGGTGGTGGTGGAAGAGGAGCACCAGGGCGGTCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCAGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACTCTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATTTGTTATGTGATGAAGATATTGGGGGGCGAAAGTCTGAAAAGGCCAAAGAGCTAGGAACTTCCTTCCTCACAGAGGATGGGTTGTTTGATATGATTCGTGCATCAAAACCTGCAAAAGCTCCTCCACAAGAAGACAAGAAACCTGTGAATAAGGCTGTTGCAGTAGCATCCCAGTCAAAAGTTTCTCCGAAATCACAAGTTAAGGCCCCTATATCTTCACGTTCACCCTCTAAGCAAGCCAAGCCAAAGACTGCCACTACTGTTCATTCTTCTTTGATGTGGACAGTGAAACATCAGCCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTACACAGCTTCGTAATTGGTTGAAAACTTGGAATGAACAATTTTTGGACACTGGTAACAAAAAACAGGGAAAAAAGCAAAATGACTCTGGTTCCAAAAAAGCTGTCTTGTTAAGTGGAACCCCCGGTATAGGAAAAACAACATCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGACAGCAAAATTGAAAAAGGAATTGGTGGAAGCAATTCAAATTCTATCAAGGATTGTATAACCAATGAGTCCCTTGGTGCTGATATGTACCGGCCAAAGCATTCTAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGACAGCATCAAGAAATCTAAAATTCCTATTATCTGCATTTGCAATGACCGGTATAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTATCGGAAGCCTACAAAGCAACAGATGGCAAAAAAGTTGATGGATGTTGCGAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAAAGATGTAATGGGGATATGCGAATGGCACTAAACCAGCTACAGTATATGAGTCTCTCCATGTCAGTTATCAACTATGATGATATTAGGCAGCGTTTTCTTACCAATGCGAAGGATGAAGACATTTCACCATTCACTGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGtgatcctgatcttgttcctcttcttgttcagGAAAATTATATTAATTACAGACCAAGCATGGCTGGTAAGGATGACAGTGGCATAAAACGCATGAACATGATTGCCCGTGCAGCTGAGTCTATTGCTGATGCAGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGCATAATTCCTGCTTCTTTGTTGCACGGGCAAAGGGAAATACTTGAACAGGGAGAAAGAAACTTTAACCGGTTTGGGGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACTTCAGGCTTTTGGATGATCTGCACGTTCACATTCTTGCTTCTCGTGGATCTAGTTCAGGAAGGGATGCCATTCGCATGGAATACCTTACTCTTCTTCTTCAACAATTGACAGAACCCCTGCGATCCCTGCCTAAGGCTGAAGCTGTTCAGCAAGTTGTGGAATTTATGGATAAATACTCTATCAGTCAGGAAGATTTTGATACCATAGTGGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCTGTTAAGTCAGCATTGACAAAAGCATACAAAGAGCAAGGAAAATCTCGGGTGGTTCGAGTTGCAGATCTAATCTCTCTTCCTGGAGTAAAGAAGGCCCCTAAAAAGCGGATTGCTGCTATTCTTGAACCGGCTGATGATGCAGTGGAAAAAGGTGAAGGTAACGCCTTAGATGAAAGTGAAGAAGAGAGCTCTGATACAGAAGAGTTGGAAGGCACCACCAAGGCCGAGAAGCTGCAATCAGAACTTAAAAGCTTGAATTCAAAGGCCACGCAAGTAGAATTGGAACTAAAGGGAACGGGAAATTCAGGTTCCAAGAAAACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGGGCAGAAGGTTGCCCCAGCTCCTAAGACAACAAAAAGAAAAAGGTGA 2844 0.4311 MSDIRKWFMKSHDKGNNAAASKSSNQPKPSSDKPQTEKTVPGGQESSGRRVTSKYFNANKQKVKDEKETQELPAKRKNMKDSEDMPEPKKIHEDDGDDPVLLTKKKKLAAATPTKKLKSGSGRGIPQKSVDLEESDEDDDKDVVSAAKSGGRGGGGRGAPGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPPQEDKKPVNKAVAVASQSKVSPKSQVKAPISSRSPSKQAKPKTATTVHSSLMWTVKHQPKDPKDIIGNQSLVTQLRNWLKTWNEQFLDTGNKKQGKKQNDSGSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGIGGSNSNSIKDCITNESLGADMYRPKHSKSVLIMDEVDGMSAGDRGGVADLIDSIKKSKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKLMDVAKAEGLQVNEIALEELAERCNGDMRMALNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLVQENYINYRPSMAGKDDSGIKRMNMIARAAESIADADIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRGSSSGRDAIRMEYLTLLLQQLTEPLRSLPKAEAVQQVVEFMDKYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQGKSRVVRVADLISLPGVKKAPKKRIAAILEPADDAVEKGEGNALDESEEESSDTEELEGTTKAEKLQSELKSLNSKATQVELELKGTGNSGSKKTSGGRGKGASASGQKVAPAPKTTKRKR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00991 947 CDD AAA 382 515 - -
Cca04g00991 947 PANTHER REPLICATION FACTOR C SUBUNIT 1 10 920 - -
Cca04g00991 947 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 920 - -
Cca04g00991 947 ProSiteProfiles BRCT domain profile. 196 277 IPR001357 -
Cca04g00991 947 CDD HLD_clamp_RFC 522 580 - -
Cca04g00991 947 CDD BRCT_RFC1 196 274 - -
Cca04g00991 947 PIRSF RFC1 8 923 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Cca04g00991 947 Pfam Replication factor RFC1 C terminal domain 662 824 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cca04g00991 947 MobiDBLite consensus disorder prediction 296 328 - -
Cca04g00991 947 MobiDBLite consensus disorder prediction 16 58 - -
Cca04g00991 947 Gene3D BRCT domain 173 275 IPR036420 -
Cca04g00991 947 Gene3D - 333 521 IPR027417 -
Cca04g00991 947 MobiDBLite consensus disorder prediction 180 195 - -
Cca04g00991 947 SUPERFAMILY BRCT domain 196 277 IPR036420 -
Cca04g00991 947 Pfam BRCA1 C Terminus (BRCT) domain 198 273 IPR001357 -
Cca04g00991 947 Gene3D - 522 592 - -
Cca04g00991 947 SMART AAA_5 385 523 IPR003593 -
Cca04g00991 947 MobiDBLite consensus disorder prediction 59 104 - -
Cca04g00991 947 MobiDBLite consensus disorder prediction 1 197 - -
Cca04g00991 947 MobiDBLite consensus disorder prediction 892 928 - -
Cca04g00991 947 SMART BRCT_7 198 276 IPR001357 -
Cca04g00991 947 Pfam ATPase family associated with various cellular activities (AAA) 389 501 IPR003959 GO:0005524|GO:0016887
Cca04g00991 947 MobiDBLite consensus disorder prediction 278 328 - -
Cca04g00991 947 MobiDBLite consensus disorder prediction 862 947 - -
Cca04g00991 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 582 IPR027417 -
Cca04g00991 947 Gene3D - 594 703 - -
Cca04g00991 947 Coils Coil 889 909 - -
Cca04g00991 947 SUPERFAMILY post-AAA+ oligomerization domain-like 593 738 IPR008921 GO:0003677|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00991 1 904 Core DNA Replication Machinery Family AT5G22010 67.320 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00991 K10754 - gmx:100790070 1533.47