Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00991 | ATGAGTGATATAAGGAAGTGGTTCATGAAATCGCATGACAAGGGGAACAATGCCGCTGCCTCCAAGTCTTCCAATCAACCCAAGCCTTCTTCGGATAAACCCCAGACCGAGAAAACGGTGCCTGGAGGTCAGGAAAGTTCAGGGAGGAGGGTAACTAGCAAATATTTTAATGCGAACAAGCAAAAGGTGAAAGATGAGAAAGAAACGCAGGAGCTCCCTGCTAAAAGGAAGAATATGAAGGACAGTGAGGATATGCCGGAGCCAAAGAAAATTCATGAAGATGATGGAGATGACCCTGTCTTGCTCACTAAAAAAAAGAAGTTAGCCGCTGCCACTCCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCCAGAAATCTGTAGATTTGGAAGAAAGTGATGAAGATGATGACAAAGATGTCGTGTCTGCTGCTAAATCTGGTGGAAGGGGTGGTGGTGGAAGAGGAGCACCAGGGCGGTCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCAGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACTCTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATTTGTTATGTGATGAAGATATTGGGGGGCGAAAGTCTGAAAAGGCCAAAGAGCTAGGAACTTCCTTCCTCACAGAGGATGGGTTGTTTGATATGATTCGTGCATCAAAACCTGCAAAAGCTCCTCCACAAGAAGACAAGAAACCTGTGAATAAGGCTGTTGCAGTAGCATCCCAGTCAAAAGTTTCTCCGAAATCACAAGTTAAGGCCCCTATATCTTCACGTTCACCCTCTAAGCAAGCCAAGCCAAAGACTGCCACTACTGTTCATTCTTCTTTGATGTGGACAGTGAAACATCAGCCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTACACAGCTTCGTAATTGGTTGAAAACTTGGAATGAACAATTTTTGGACACTGGTAACAAAAAACAGGGAAAAAAGCAAAATGACTCTGGTTCCAAAAAAGCTGTCTTGTTAAGTGGAACCCCCGGTATAGGAAAAACAACATCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGACAGCAAAATTGAAAAAGGAATTGGTGGAAGCAATTCAAATTCTATCAAGGATTGTATAACCAATGAGTCCCTTGGTGCTGATATGTACCGGCCAAAGCATTCTAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGACAGCATCAAGAAATCTAAAATTCCTATTATCTGCATTTGCAATGACCGGTATAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTATCGGAAGCCTACAAAGCAACAGATGGCAAAAAAGTTGATGGATGTTGCGAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAAAGATGTAATGGGGATATGCGAATGGCACTAAACCAGCTACAGTATATGAGTCTCTCCATGTCAGTTATCAACTATGATGATATTAGGCAGCGTTTTCTTACCAATGCGAAGGATGAAGACATTTCACCATTCACTGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGtgatcctgatcttgttcctcttcttgttcagGAAAATTATATTAATTACAGACCAAGCATGGCTGGTAAGGATGACAGTGGCATAAAACGCATGAACATGATTGCCCGTGCAGCTGAGTCTATTGCTGATGCAGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGCATAATTCCTGCTTCTTTGTTGCACGGGCAAAGGGAAATACTTGAACAGGGAGAAAGAAACTTTAACCGGTTTGGGGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACTTCAGGCTTTTGGATGATCTGCACGTTCACATTCTTGCTTCTCGTGGATCTAGTTCAGGAAGGGATGCCATTCGCATGGAATACCTTACTCTTCTTCTTCAACAATTGACAGAACCCCTGCGATCCCTGCCTAAGGCTGAAGCTGTTCAGCAAGTTGTGGAATTTATGGATAAATACTCTATCAGTCAGGAAGATTTTGATACCATAGTGGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCTGTTAAGTCAGCATTGACAAAAGCATACAAAGAGCAAGGAAAATCTCGGGTGGTTCGAGTTGCAGATCTAATCTCTCTTCCTGGAGTAAAGAAGGCCCCTAAAAAGCGGATTGCTGCTATTCTTGAACCGGCTGATGATGCAGTGGAAAAAGGTGAAGGTAACGCCTTAGATGAAAGTGAAGAAGAGAGCTCTGATACAGAAGAGTTGGAAGGCACCACCAAGGCCGAGAAGCTGCAATCAGAACTTAAAAGCTTGAATTCAAAGGCCACGCAAGTAGAATTGGAACTAAAGGGAACGGGAAATTCAGGTTCCAAGAAAACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGGGCAGAAGGTTGCCCCAGCTCCTAAGACAACAAAAAGAAAAAGGTGA | 2844 | 0.4311 | MSDIRKWFMKSHDKGNNAAASKSSNQPKPSSDKPQTEKTVPGGQESSGRRVTSKYFNANKQKVKDEKETQELPAKRKNMKDSEDMPEPKKIHEDDGDDPVLLTKKKKLAAATPTKKLKSGSGRGIPQKSVDLEESDEDDDKDVVSAAKSGGRGGGGRGAPGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPPQEDKKPVNKAVAVASQSKVSPKSQVKAPISSRSPSKQAKPKTATTVHSSLMWTVKHQPKDPKDIIGNQSLVTQLRNWLKTWNEQFLDTGNKKQGKKQNDSGSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGIGGSNSNSIKDCITNESLGADMYRPKHSKSVLIMDEVDGMSAGDRGGVADLIDSIKKSKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKLMDVAKAEGLQVNEIALEELAERCNGDMRMALNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLVQENYINYRPSMAGKDDSGIKRMNMIARAAESIADADIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRGSSSGRDAIRMEYLTLLLQQLTEPLRSLPKAEAVQQVVEFMDKYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQGKSRVVRVADLISLPGVKKAPKKRIAAILEPADDAVEKGEGNALDESEEESSDTEELEGTTKAEKLQSELKSLNSKATQVELELKGTGNSGSKKTSGGRGKGASASGQKVAPAPKTTKRKR | 947 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00991 | 947 | CDD | AAA | 382 | 515 | - | - | |
| Cca04g00991 | 947 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 10 | 920 | - | - | |
| Cca04g00991 | 947 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 10 | 920 | - | - | |
| Cca04g00991 | 947 | ProSiteProfiles | BRCT domain profile. | 196 | 277 | IPR001357 | - | |
| Cca04g00991 | 947 | CDD | HLD_clamp_RFC | 522 | 580 | - | - | |
| Cca04g00991 | 947 | CDD | BRCT_RFC1 | 196 | 274 | - | - | |
| Cca04g00991 | 947 | PIRSF | RFC1 | 8 | 923 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Cca04g00991 | 947 | Pfam | Replication factor RFC1 C terminal domain | 662 | 824 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Cca04g00991 | 947 | MobiDBLite | consensus disorder prediction | 296 | 328 | - | - | |
| Cca04g00991 | 947 | MobiDBLite | consensus disorder prediction | 16 | 58 | - | - |
Showing 1 to 10 of 28 entries
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00991 | K10754 | - | gmx:100790070 | 1533.47 |
Showing 1 to 1 of 1 entries