Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00988 ATGTCAATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTATGCTAACCATAGTGACTGTTAGATGTGGACATTGTGCCAATTTGCTATCAGTTAACATGGGAGCGTCACTTCAAGCATTTCCTCCTCAAGACCCTCAGAAACAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAGATAGCGCCATTTGAGGCAGTTGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCAGCTTATAACCGGTTCATTAAGGAAGAAATCCAAAGGATTAAGGTTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCGGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGCTGGATTAAAGCTGGATGGCAACAACAAGCAAGCAAAGTTGGACCAGGGTGAAGGAGCTGAAAAGTCTAATGGATTCTACTGA 549 0.4426 MSMEMMATERVCYVHCNFCNTILAVSVPYSSMLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQKQHLSFEEPSSKELGSSSKCNKIAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKVSNPDISHREAFSSAAKNWAHFPHIHFAGLKLDGNNKQAKLDQGEGAEKSNGFY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00988 182 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Cca04g00988 182 SUPERFAMILY HMG-box 102 150 IPR036910 -
Cca04g00988 182 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 182 - -
Cca04g00988 182 Pfam YABBY protein 7 155 IPR006780 GO:0007275
Cca04g00988 182 Gene3D High mobility group box domain 102 171 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00988 Cca-Chr4 10695036 10702611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00988 1 182 C2C2-YABBY Transcription Factor Family AT1G08465 63.492 4.92e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca04g00988 YABBY 2e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00988 K25796 - gmx:100500091 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00682 10 7599133 7608153 Cca04g00988 04 10695036 10702611 PCT