Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00984 ATGTTCGGGAGGGCACCCAAGAAGAGCGATAACACGAGGTACTACGAAATCCTCGGCGTCAACAAGAACGCATCGCAGGATGATTTGAAGAAGGCTTACAAGAAAGCCGCCATTAAGAACCACCCTGACAAGGGCGGTGATCCCGAGAAGTTTAAGGAGCTGGCTCAAGCTTACGAGGTTCTGTGTGACCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAGGATGCGCTTAAGGAAGGAATGggtggtggtggtggtggCCATGATCCGTTTGACATCTTTTCGTCCTTCTTTGGTGGTGGAAGCCCGTTTGGAGCAGGTGGTCCTAGTCGAGGTAGGAGGCAGAGACGTGGAGAAGATGTGGTTCACCCTCTCAAGGTCTCTTTGGAGGATCTTTACCTTGGAATTTCTAAGAAGCTCTCCCTTTCCAGAAATGTCATATGCTCCAAGTGCAGTGGCAAGGGTTCCAAATCTGGGGCTTCAATGAAGTGTGCTGGTtgtcaaggaactggtatgaaggtttctatcagacatctcggtccgtccatgattcagcagatgcagcatgcttgcaatgaatgtaagggtactggagaaactatcaatgatagagaccgctgcccacagtgcaagggagagaaggttgtgcaggagaagaaagttcttgaggttcatgtggagaagggaatgcagaacgggcagaagattacattccctggtgaagctgaTGAAGCGCCGGACACAATTACTGGGGATATAGTCTTTGTGCTTCAGCAGAAAGAACATCCCAAATTCAGAAGAAAGTCTGAAGACCTTTTTGTGGAGCACACGTTGTCCCTCACTGAGGCCTTATGTGGCTTCCAATTTGTGCTGACTCACTTGGATGGTCGTCAACTTCTTATAAAGTCAAATCCTGGGGAAGTTGTCAAGCCTGATGCATACAAGGCTATCAATGATGAGGGAATGCCGATGTACCAGAGACCATTTATGAAGGGGAAGCTGTACATCCATTTCACTGTGGAATTCCCTGATTTTCTGAATGCTGATCAGGTTAAGGCCTTGGAAGCCGTTCTGCCACCAAAGCCTTCTTCGCAGTTGACAGACATGGAGCTGGACGAGTGTGAGGAGACAACACTACATGATGTGAATATGGAGGAGGAGACTAGGAGGAAGCAGCAGCAGGCAGCTCAGGAGGCGTATGATGAGGATGATGAGATGCCTGGTGGTGCACAGAGGGTACAGTGCGCCCAGCAGTAA 1260 0.3944 MFGRAPKKSDNTRYYEILGVNKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLCDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGSPFGAGGPSRGRRQRRGEDVVHPLKVSLEDLYLGISKKLSLSRNVICSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVHVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKSEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDAYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDFLNADQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQAAQEAYDEDDEMPGGAQRVQCAQQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00984 419 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Cca04g00984 419 CDD DnaJ 14 63 IPR001623 -
Cca04g00984 419 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Cca04g00984 419 SUPERFAMILY Chaperone J-domain 8 110 IPR036869 -
Cca04g00984 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Cca04g00984 419 SMART dnaj_3 12 66 IPR001623 -
Cca04g00984 419 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Cca04g00984 419 Gene3D - 263 345 - -
Cca04g00984 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Cca04g00984 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Cca04g00984 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 370 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca04g00984 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 419 IPR044713 GO:0006457|GO:0030544
Cca04g00984 419 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 419 - -
Cca04g00984 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Cca04g00984 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Cca04g00984 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Cca04g00984 419 CDD DnaJ_C 120 347 - -
Cca04g00984 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 115 273 IPR008971 GO:0006457|GO:0051082
Cca04g00984 419 MobiDBLite consensus disorder prediction 380 419 - -
Cca04g00984 419 Gene3D - 149 215 - -
Cca04g00984 419 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Cca04g00984 419 Pfam DnaJ domain 14 71 IPR001623 -
Cca04g00984 419 MobiDBLite consensus disorder prediction 380 399 - -
Cca04g00984 419 Gene3D - 110 261 - -
Cca04g00984 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 355 IPR008971 GO:0006457|GO:0051082
Cca04g00984 419 Gene3D DnaJ domain 10 109 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00984 Cca-Chr4 10634760 10637009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00984 14 73 C2H2 Transcription Factor Family AT1G74250 40.580 1.01e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00984 04 10634760 10637009 Cca04g00984 04 10634760 10637009 ECH