Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00979 ATGGATGAAACAGAGATTCCTACCCTTTTCCTGTGCCCGATTTCTCTGCAGCTTATGAGAGACCCTGTGACAGTGTGCACAGGAATCACATACGACAGAGAAAACATAGAGAGATGGTTATTTTCATGCAACAAAAACAAAACCTGCCCTGTTACTAAGCAATCATTGTCACACAATGATCTTACTCCAAACCACACTCTCCAACGTGTGATCCAAGCTTGGTGCACCGACAATATTGGAGCTCAAACTATTTTATCTCCAAAGTCAATCATTGACCAAACTGAAATTTTCAAACCCCTCTTCGAATCAAAGAAGTTCCCGGAGAAACAGCTCAAGTGTCTTAGAATGCTTGAATTTATTGCTTTTGAAAGTGAAAGTAACAAAAACTGTTTGAATTCTGCAGGGGCTATAGATTTCTTGGCTTCCACCATGATGTTGAACAAAAGCCAAGGAGTTTCAAATTCAAGTGCTATCATGAGTGAAGTAGCACTTGAAGTGTTGTTCCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAAGGAGGGGGTCCAGTTTGTGGAGTCCTTGTTTGAGGTGTTGAAGCTGGGAAAGTTCCGATCTCGAGCTCATGCAGCTGTGCTATTGAAGTCAGCATTTGAGGTGGCTGGTCCAACCCAATTGAGCAATGTCACATCAGAACTGTTTGTGGAAATAGTTAGAGTTCTAAGGGATCAGATTTCACAAGAGGCTTCTAAGGCAGCATTGAAGCTTCTTGTGAGGTTGTGTTCATGGGGAAGGAACAGAAGCAAAGCAGTTGAGGGTGGTGCGGTTTTAGTTCTCATTGAGCTACTTCTTGATGTGTCTGAAAGGAGAACATGTGAACTCATGTTGATAGCTTTGGACAGGCTTTGTGGCTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGTCAAAGAAGATTCTGAGGGTTTCACAAGTGGGAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTAGTAGGCATTCAGCCACCCCAAGAGTCCTTCATGAAATGTTGCTATTTGGGGCAGTGTCAAAGTTGTGCTTGGTCCTTCAAGTGGAGGGTAGTTTCAAGGCCAAGGAGAGGGCTAGGGAGACACTCAAATTGCACTCTACGGCTTTTATTATGAAGTTTGTTTTAGCGGCAACCATTCAAGCATTGAATCTGTATTCACAGAAAGCGGAGATTGATTTTGTGAACACGGTTCTTAAAGCTTTTGGCCCCCTACAAATACCCTCATTCCCTCCCTCCATTGCCATCATCAACCACAAACAATTTCATTCCTCCAACATCATTGTACAACACAAATTATACAATCCTCATCCTTGTTACTACAACTTGCAACTTCCACTCCCAGTGGTCTCTCACAAGAGACCTCTGTTGGATATTGTTCTCTTGCTTCAGTTAAGCGAGTTACACTTTCCTTCGTGCTTAGACATGTCAGCAACCTCCATGACTATGACCAACAACGTTCAAAGCCTAGAGGAAGAGACCACGATGCCGAAGCAGGGCATCATCACCATTTTGGACTCAAACTCAAACACAGCTTCTTCTTGTTCTTCCCTGCGAAGAACTCTCTCTGCAGACATGTCCTCCAAGCACTGGCTCTCTCAAACCATTGCTGACTCCGAAGCTGAAAGAGAGAGGCTTGAGATATGGAGCTCCATTCAAAAGAGCAAAAAGGAGGAACAAGAGAAATCAGCACCGTTTGATACGTGGAGCACAATCATATCCCTCAAGGGAAAAGATGAAATCTCCAAGTCACTTCCTGTGACACCTTATGTTCACCCTCTTGTGAAAAGGTCAAAGAGTTTAAGTGAGAAGAGCCTCCAAATCTGCACCGAGAGTCTCGGATCCGAGACTGGCTCTGATGGCTTGTTGTTCTCTTCTTACCCTTCTTCTGAGACAGGGGATGTAAAGAAAGAAGAGAAAGTTTTTCTAGAACCAACTAATCaagaacaagaggaaggaaaaaaagaagaagaGTTTTACAATTATGTTCCAGTGGCTACAAAGAAGGCTTCATCACCACCACGTGCTTTTCCTCCGCCACTCCCTTCACTCTCTCATCATCACCAAGCTGCTCCTTCACTTCACATGCATTCCCGCCGTGACAATGGAAGGTTGGTTCTAGAAGCTGTTTCTGTTCCTTCTCAAAACAATTTCAGTGTTCAGCGCCAAGATGGTCGCCTTGTCCTCACTTTCTCCAATCACCTTGAGGAGGAAGAAGAGAATGATGATCATGTGGAAGAAGAGTACTTAGGAGAGTGTGAGTTCGAAgaaaatgaagattatgaagaagagtatgagggtgaaaagaaaaatgaagatgaaTACTCTTTTGGTACCAGGTTACAGGTATCCTCCACTGAAGACAATTCTGGTTTGATGGGATATGAGAGTGTGATAGAGAAAGCACCCTTATTGTCTAGTGGGGTGAGAAGTAGTGTTCATGAGTTGGCTTTGATGATGAACAAGAATAAGCCAATTGGTTTGGTGAACAGGAATCCAAAGTGGTCTGAAAAGTTCAATGAGATGAGCAATTTTGAGGATGTTAATGTTGCACAATCGTTGCCTCCAAGGCCAAGGGTAGCTAGGTTGATTCCATCAGCACCAGCTATGGTTAAGGGTTCTTTCAATTTCAATGCTTATGAGTATTGTTGGAGGACCAAGTCTGCTACATCAAAAGGTACTGGTGTTAACCTTAACCCACTTGACCAAGAGAAACATCATCATCAAGAGAACCTGAAGAGCAAGGTCGTTGTGTCTGGGAACAAGAACAAGGCGCTCTCAAATGAGCAACAACAGTTGCTGGTTTTGAGAGGGAAGAATGGTGATTACTTGGTTCACAATTTGAAGAGTTGCAAGGATTCTAGAAGGTCGTTTCTGTTTTGGGAACCTTATTGCATTGCCACTTCCTGA 2970 0.4253 MDETEIPTLFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCNKNKTCPVTKQSLSHNDLTPNHTLQRVIQAWCTDNIGAQTILSPKSIIDQTEIFKPLFESKKFPEKQLKCLRMLEFIAFESESNKNCLNSAGAIDFLASTMMLNKSQGVSNSSAIMSEVALEVLFHLNPSESQLKNLMNKEGVQFVESLFEVLKLGKFRSRAHAAVLLKSAFEVAGPTQLSNVTSELFVEIVRVLRDQISQEASKAALKLLVRLCSWGRNRSKAVEGGAVLVLIELLLDVSERRTCELMLIALDRLCGCAEGRAELVNHGAGVAVVSKKILRVSQVGSDRGVKILTSISRHSATPRVLHEMLLFGAVSKLCLVLQVEGSFKAKERARETLKLHSTAFIMKFVLAATIQALNLYSQKAEIDFVNTVLKAFGPLQIPSFPPSIAIINHKQFHSSNIIVQHKLYNPHPCYYNLQLPLPVVSHKRPLLDIVLLLQLSELHFPSCLDMSATSMTMTNNVQSLEEETTMPKQGIITILDSNSNTASSCSSLRRTLSADMSSKHWLSQTIADSEAERERLEIWSSIQKSKKEEQEKSAPFDTWSTIISLKGKDEISKSLPVTPYVHPLVKRSKSLSEKSLQICTESLGSETGSDGLLFSSYPSSETGDVKKEEKVFLEPTNQEQEEGKKEEEFYNYVPVATKKASSPPRAFPPPLPSLSHHHQAAPSLHMHSRRDNGRLVLEAVSVPSQNNFSVQRQDGRLVLTFSNHLEEEEENDDHVEEEYLGECEFEENEDYEEEYEGEKKNEDEYSFGTRLQVSSTEDNSGLMGYESVIEKAPLLSSGVRSSVHELALMMNKNKPIGLVNRNPKWSEKFNEMSNFEDVNVAQSLPPRPRVARLIPSAPAMVKGSFNFNAYEYCWRTKSATSKGTGVNLNPLDQEKHHHQENLKSKVVVSGNKNKALSNEQQQLLVLRGKNGDYLVHNLKSCKDSRRSFLFWEPYCIATS 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00979 989 MobiDBLite consensus disorder prediction 689 716 - -
Cca04g00979 989 MobiDBLite consensus disorder prediction 775 795 - -
Cca04g00979 989 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Cca04g00979 989 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Cca04g00979 989 Gene3D - 92 413 IPR011989 -
Cca04g00979 989 PANTHER OS11G0573500 PROTEIN 2 400 - -
Cca04g00979 989 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Cca04g00979 989 Pfam Fantastic Four meristem regulator 696 751 IPR046431 -
Cca04g00979 989 SUPERFAMILY ARM repeat 99 383 IPR016024 -
Cca04g00979 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Cca04g00979 989 CDD RING-Ubox_PUB 10 54 IPR045210 -
Cca04g00979 989 MobiDBLite consensus disorder prediction 775 789 - -
Cca04g00979 989 PANTHER WDSAM1 PROTEIN 2 400 IPR045185 GO:0061630
Cca04g00979 989 SUPERFAMILY RING/U-box 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00979 Cca-Chr4 10556395 10564769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00979 2 390 U-box Gene Family AT2G35930 50.882 2.96e-123 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00979 - - var:108340160 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00979 04 10556395 10564769 Cca04g00979 04 10556395 10564769 ECH
Cca10g00670 10 7410870 7412484 Cca04g00979 04 10556395 10564769 PCT