Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00978 ATGGAAGAAGTTGAAACTCCTCAGTATTTTCTCTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACAACCGTGACAGGCATAACATATGACAGAGAGAGCATAGAACAATGGTTGCTGAAGGCAAAAGAGTGTGTGTGCCCTGTCACAAAACAACCATTGTCAAGAAGCTTTCAATACTTAACCCCTAATCACACACTTCGGAGGCTAATCCAAGCATGGTCTTCATCCAACACAGGTGTTGAAAGAGTTTCAACCACGAAAACCCCTTTAAACATGATCCATGTTAAGAAGCTTGTGAAGGGTCTCGATGCTCCTCGTGATTATTCTTTTCAAACCTCGTTGGAGAAGTTGCATGCCTTGGCTTCACAAAGCGAGAGGAATAGAATTTGCATGGCTGAGGCTGGTGTAGCCAAGGCTATGGTCAAAGTTATCAACCAGAATTTCCAAAACAGAAACACCACTTGCATGGAAGAGGCTTTGAGAGTTGTTCATCTTCTTTGGAACACTGATCACAACGGCATGAGAACTCTAGTGGGGGAGAACTTTGACTTCATCAACTCTTTGACTTGGATTTTGCAACATCATTTGGATAACAAGAAGATGGTGAATGAAGCAATGACCCTCTTGAAGTTGACAATTGAAGTTGCTGACTCAACTCTTTTAGGGAGTTTAAGCCTTGAATTCTTCAAGGAAATTGTGAGAGTATTGAGAAATAAGGCACTCTCTCAACAAGCCATTAAATCTGCGTTGCATGTGCTTACACAAACTCTCCCTGTGGCTAGAAACAGAACTAAGATCGTTGAAGCTGGTGCAGTCGCAGAACTCATAGAGCTTGAGCTTGAGAAACCAGAGAAGAACATCACAGAACTCATATTCAACCTTTTGGCACACCTTTGTTCTTGTGCTGAAGGAAGAGAACAGTTTCTGAGACATGGCGCGGGCATTGCGTTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCGATTCATGTGTTTTCTGTGATTGCTAAGTTTTCTGCATCAGATGAGGTTGTTCTTGAGATGTTGAGGGTTGGAGCAGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAGAAAGCAAGAGAAATCCTTAGGTTACACTCCAAAGTTTGGAATAATTCTCCTTGTATACAAGTTTATTTGTTGACTAGGCACCAAAGGTGA 1224 0.4248 MEEVETPQYFLCPISFQIMEDPVTTVTGITYDRESIEQWLLKAKECVCPVTKQPLSRSFQYLTPNHTLRRLIQAWSSSNTGVERVSTTKTPLNMIHVKKLVKGLDAPRDYSFQTSLEKLHALASQSERNRICMAEAGVAKAMVKVINQNFQNRNTTCMEEALRVVHLLWNTDHNGMRTLVGENFDFINSLTWILQHHLDNKKMVNEAMTLLKLTIEVADSTLLGSLSLEFFKEIVRVLRNKALSQQAIKSALHVLTQTLPVARNRTKIVEAGAVAELIELELEKPEKNITELIFNLLAHLCSCAEGREQFLRHGAGIALVSKRVLRVSAATDDRAIHVFSVIAKFSASDEVVLEMLRVGAVSKLCMVMQADCASYLKEKAREILRLHSKVWNNSPCIQVYLLTRHQR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00978 407 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Cca04g00978 407 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Cca04g00978 407 SUPERFAMILY RING/U-box 3 78 - -
Cca04g00978 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 404 - -
Cca04g00978 407 Gene3D - 96 394 IPR011989 -
Cca04g00978 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Cca04g00978 407 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Cca04g00978 407 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Cca04g00978 407 CDD RING-Ubox_PUB 10 53 IPR045210 -
Cca04g00978 407 SUPERFAMILY ARM repeat 96 385 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00978 Cca-Chr4 10529538 10530964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00978 2 397 U-box Gene Family AT2G35930 40.695 1.39e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00978 - - gmx:100787426 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00978 04 10529538 10530964 Cca04g00978 04 10529538 10530964 ECH
Cca10g00669 10 7396158 7397009 Cca04g00978 04 10529538 10530964 PCT