Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00975 ATGGCGACGTACTTTCATGGCAGCACTTCAGAAATCCCGTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCCTACACTGACGCGTCGCAACACCCAACGCAAAACATGCTCCTCGTCAATTCCAACACTAGTAACACTCCCACCAACGCGCTCAACCTCGCTAACTTCTCccacgcgccgccgccacaatctcccaacaaccaccgtgagcaccaccaccaccTAATTGGGGTTACCATTCCCTCGTCAAGCATCCTCGGATCAAACTCCGACCCCGCTCGGCCCTTGTGCTTAGGACAACATGATTCCATGTTCGATCAATCTGCATCGAATATAATGTCAGCCACAGAAAACATCCCATCCAATATGGGATGTGTGACATCTGTCGCCGCCATTTCGACGCAGATTGGTTTTCATAGGCCTAATCAGTTATCACTGAGCCTCTCTTCACAACAAACACCTTATAGGTCTCTCTCCGGGGAGGTTCATGCCGTGTCTCCGGCGAGCCGCGGCGGCGACGATGTGCATAGTGTTGTTTTGGGTTCAAAGTATTTGAAATCCACGCAGGAGCTTCTTGATGAAGTTGTGAATGTGGGTAAGGGAATCTCCAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAGGGGAATATTGAATCCACTTCTGGGGTTGGTGATGGTTCGAGCTGTGGAGGAGAGAATAATAGTGGAGGCAAACAAGGAGGTGAACTCAGCACGGCACAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTGAGCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAGTTGTGATAACATCATTTGAGCAAGCAGCGGGAGTAGGGGCTGCAAAGTCTTACACAGCCCTTGCCTTGAAGACAATCTCAAAGCAATTTCGGTGTCTGAAAGATGCAATCTCATCACAAATCAAGACAACGAGCAAGAACATAGGTGAAGATGACTGCTTAGGAGTTAAGGTAGAAGGTTCGAGGCTTAGGTACGTTGATCATCATCTACGACAACAACATGCATTGCAGCAGCTAGGAATGATCCAACACAATGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGCGCTGTTTCCGTTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCTAAGGACTCTGATAAGGTTATGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTGTCTAATTGGTTCATAAATGCCCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACATGGAAGAGGTGAAGCAAGAGCAGAATAATGGGTCTCAGGATAACAACACAAACAGATCAAAAGAATCAGAAGCTAATGCTGCACAAGAATCAAGTGCCATGAGACTTGACCAGAATAATATTCACCAATCAAACAAGGCAGAAAGCTTCAACAACCAAACCACTTCCCCAACAGAGATCTCCAATTCCAACATGCAAAGTCCAAACAAGCCTAGAAGCACTTCCGAAATGCAGAACTCTCCAGGTAGCATCGTGGACATGGAAATGAAGCCTCATCATGGAGAGACAAACACTAGAGAAGGAAACACAAAGTTGTTTGGCATTGAAAACCATCATTTTGGAGCATTTGGTATGGAAGACATTGGAAGGTTTCATCATGTCACTGAGCAACAACTGACTCCTAGGTTTCACGGAAACGGAGTTTCCCTCACTCTAGGACTTCCACACAGTGAGAACCTTTCTCTCTCAGGAACTCAGCATGGATTCCTCTCACAGAATATGCACTTGGGAATGAGAACCAATGAAAATGAGTTTTGTGGTGCCATCAACACTCCTCCTTCTTCTCATTCAGGCACAAGTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTCGCTGCACAGTTGTTGAGAGATTTCGTGGCCTGA 1971 0.4505 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYTDASQHPTQNMLLVNSNTSNTPTNALNLANFSHAPPPQSPNNHREHHHHLIGVTIPSSSILGSNSDPARPLCLGQHDSMFDQSASNIMSATENIPSNMGCVTSVAAISTQIGFHRPNQLSLSLSSQQTPYRSLSGEVHAVSPASRGGDDVHSVVLGSKYLKSTQELLDEVVNVGKGISKGEESMEGAKKEKMKGNIESTSGVGDGSSCGGENNSGGKQGGELSTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQVVITSFEQAAGVGAAKSYTALALKTISKQFRCLKDAISSQIKTTSKNIGEDDCLGVKVEGSRLRYVDHHLRQQHALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKQEQNNGSQDNNTNRSKESEANAAQESSAMRLDQNNIHQSNKAESFNNQTTSPTEISNSNMQSPNKPRSTSEMQNSPGSIVDMEMKPHHGETNTREGNTKLFGIENHHFGAFGMEDIGRFHHVTEQQLTPRFHGNGVSLTLGLPHSENLSLSGTQHGFLSQNMHLGMRTNENEFCGAINTPPSSHSGTSYESIDIQNRKRFAAQLLRDFVA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00975 656 SUPERFAMILY Homeodomain-like 376 442 IPR009057 -
Cca04g00975 656 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Cca04g00975 656 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 609 - -
Cca04g00975 656 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Cca04g00975 656 Coils Coil 259 279 - -
Cca04g00975 656 MobiDBLite consensus disorder prediction 45 77 - -
Cca04g00975 656 Pfam Associated with HOX 185 326 IPR006563 -
Cca04g00975 656 Gene3D - 378 457 - -
Cca04g00975 656 MobiDBLite consensus disorder prediction 446 542 - -
Cca04g00975 656 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 609 - -
Cca04g00975 656 SMART HOX_1 375 439 IPR001356 GO:0003677
Cca04g00975 656 CDD homeodomain 375 436 IPR001356 GO:0003677
Cca04g00975 656 SMART prehox3 180 327 IPR006563 -
Cca04g00975 656 MobiDBLite consensus disorder prediction 446 523 - -
Cca04g00975 656 MobiDBLite consensus disorder prediction 231 254 - -
Cca04g00975 656 MobiDBLite consensus disorder prediction 45 71 - -
Cca04g00975 656 MobiDBLite consensus disorder prediction 213 227 - -
Cca04g00975 656 MobiDBLite consensus disorder prediction 213 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00975 Cca-Chr4 10498312 10502498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00975 1 656 Homeobox Transcription Factor Family AT2G35940 43.113 8.07e-129 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca04g00975 POX 1.9e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00975 - - gmx:100786883 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00975 04 10498312 10502498 Cca04g00975 04 10498312 10502498 ECH