Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00972 ATGATGGGGTGTGTGAAAATTTGCATCTTTATGTTTTTCACCGTGATGATCACAATGGGTTGTTATGGTGACACTAACCCAAATGATCTCCAAATTTTGAATGATTTCAGAAAAAGACTGAAGAATCCAGAGGTTCTCAAATGGCCAGAAAATGGAAATGACCCTTGTGGCCCTCCTTCGTGGCCTTATGTGTTCTGTTCTGGAGGGAGAATCACTCAGATTCAGACTAAGAATCTAGGTCTTAAAGGATCATTGCCTCCAAACTTTAACCAACTCACAGAGCTTCAAAATTTGGGTCTTCAACGCAACAACCTTAGTGGAGCGTTGCCAAGTTTCAGTGGATTGTCCAAATTGCAATATGCGTTTTTGGATTACAATGATTTTGATTCAATCCCATCTGATTTCTTCAATGGACTCACCAACCTTAGGGTTTTGTCTTTGGAGGAAAACCCTTTGAATGCAACCTCTGGGTGGTCGTTTCCCATGGACTTGAAATATTCAGTGCAATTGACAAATCTTTCTCTAGTGCATTGTAATTTGGTTGGACCATTGCCTGATTTCCTAGGCACATTGCCTTCTCTCACAAATCTGTGGCTTTCAGACAACAAATTGAGTGGTGGAATTCCAGCTAGTTTTGCTCAGTCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGCAGTTGGGATGACAGGTCCTATTGATGTGATTGCTTCAATGACTTTTCTGAATCAGGTTTGGCTACATGGAAACCAGTTCACTGGGGCAATTCCACAAAACATTGGAAACCTAACTTCCTTGAAGGAGCTCAACCTCAATAGCAATCAACTTGTTGGTTTGATTCCAGATTCCTTGTCAAATATGGACCTTCAGATACTTGTGTTGAATAATAACATGTTCATGGGTCCAGTACCAAAGTTTAATGCTGCCAAAGTATCTTATGATTCCAATTTGTTTTGTCAATCTAAGCCTGGGCTTGAATGTGCTCCTCAAGTTACTGCACTGCTGGATTTTCTCCATCATCTGAATTACCCTTCAGCTCTTGCTACTAAATGGTCAGGAAATGATCCGTGTGGAGGGTCATGGTTTGGATTAAGCTGCGATCGCAATTCAAAGGTATCTATAATCAATTTACCGAGGCAAAAGTTAAATGGCACACTAAGTCCCTCACTTGCTAAGTTAGATTCACTCCTTGAAATTAGGCTTGCAGGAAATGATATTACTGGCAATGTTCCGAGTAATTTCACTGATTTGAATTTTTTGAGGTTGTTGGATTTAAGTGATAACAATGTTGAGCCACCAATGCCATACTTTCGCGGTAATGTAAAGGTTGTTATTGAGGGTAACCCTCTACTTGTCAATCAACCTGTAAGTAGTCCTAATCCCATGCCTATTGCAAGTCCATCACCACCTTCAAGTGCAGAGCCTTCACCGCAAAACCCGTCACTGCCCCCTCCATCCTCACATATGCAACCACCCTCCTCAACTCATAGTTCAAGCATGAATCAGTCAAGTTCTGTTCAGTTAAATCCCCAACCAAATGTATTCAAAAGATTCAAAACAGTAGCAATAGTGGCTGGAGCTGCTATCTTTACACTTGTAGCACTTATGATTGCTTCTCTCTTCATATGTTGCTTGAAGAAGGAAAAAGCCTCCTTGGATGCTCCTAGCTCTGTTGTGGTTCACACTAAAGATCCATCTTATCCAGAAAAGATGACTAAATTTTTAGTTTCAGATAGCACCACTGGAAGCTCATCATCAAAGACGGGGATAAGTTCTCTGACTAACAATAGTGGTGAAAATGAGAGATCTCATGTAATTGAGGCTGGCAATATTGCCATCTCTATTCAGGTTCTACGCAAGGTCACCAACAATTTTGCTTCAGAAAATGAGCTAggccgtggtgggtttggaactgtttacaagggtgaaatagaacatactaccaaaatagcagtgaagagaatggagtgtggagctcctagcagtagagcattggatgagtttcaagctgaaatagctgttctttccaaggtccgacaccgacatttggtatccctgctaggctattgcattgaaggaaatgaaaggcttttggtttatgaatatatgcctctgggtgctctaagccggcatctttttcattggaaaaacttgaaattggagcctttgtctttgtcgcagaggtttacaatagcacttgatgttgctagagcaatggaataccttcataatcttgcacgccaaaccttcatccaccgagacctcaagtcttctaatattctactgggggatgattttcgtgcgaaagtttctgattttggtctGGTGAAACTTGCACCAGATGGCGACAAGTCTGTGGCAACAAAGCTTGCTGGAACATTTGGATACCTTGCCCCTGAGTATGCAGTTATGGGGAAAATCACCACTAAAGTTGATGTGTTCAGCTACGGTGTGGTGTTGGTAGAACTTCTAACTGGACTAATGGCCCTTGACGAGAGCCGGCCGGAGGAAAGCCGATACCTAGTTGAATGGTTTTGGCAAATTAAATCGTGCAAAGAAGCGCTCAAGGCTGCCATTGATCCAACTCTTGAAGTAAGTGAAGAGACTTTTGAGAGCATTTCCATTGTAGCTGAACTTGCTGGACATTGCACTTCCAGGGAAGCAAGTCACAGGCCTGATATGAGCCACGTAGTCAATGTGCTATCCACGTTAGTAGAGAAATGGCGACCGATGGACGAAGAACCTGATTACAACTCCGGCATCGACTTCAGTCATCCACTTCCTCAGTTGCTGAAAGTTTGGAAGGAATCAGAAGGCAAAGATTCAAGCTATGCAAGTGAACACAGTGAAGGAAGCATACCAGCCAAACCTTCTGGTTTTGCAGACTCTTTTACTTCTTCTGATGCAAGATGA 2913 0.3587 MMGCVKICIFMFFTVMITMGCYGDTNPNDLQILNDFRKRLKNPEVLKWPENGNDPCGPPSWPYVFCSGGRITQIQTKNLGLKGSLPPNFNQLTELQNLGLQRNNLSGALPSFSGLSKLQYAFLDYNDFDSIPSDFFNGLTNLRVLSLEENPLNATSGWSFPMDLKYSVQLTNLSLVHCNLVGPLPDFLGTLPSLTNLWLSDNKLSGGIPASFAQSSIQVLWLNDQAVGMTGPIDVIASMTFLNQVWLHGNQFTGAIPQNIGNLTSLKELNLNSNQLVGLIPDSLSNMDLQILVLNNNMFMGPVPKFNAAKVSYDSNLFCQSKPGLECAPQVTALLDFLHHLNYPSALATKWSGNDPCGGSWFGLSCDRNSKVSIINLPRQKLNGTLSPSLAKLDSLLEIRLAGNDITGNVPSNFTDLNFLRLLDLSDNNVEPPMPYFRGNVKVVIEGNPLLVNQPVSSPNPMPIASPSPPSSAEPSPQNPSLPPPSSHMQPPSSTHSSSMNQSSSVQLNPQPNVFKRFKTVAIVAGAAIFTLVALMIASLFICCLKKEKASLDAPSSVVVHTKDPSYPEKMTKFLVSDSTTGSSSSKTGISSLTNNSGENERSHVIEAGNIAISIQVLRKVTNNFASENELGRGGFGTVYKGEIEHTTKIAVKRMECGAPSSRALDEFQAEIAVLSKVRHRHLVSLLGYCIEGNERLLVYEYMPLGALSRHLFHWKNLKLEPLSLSQRFTIALDVARAMEYLHNLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGDKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLVELLTGLMALDESRPEESRYLVEWFWQIKSCKEALKAAIDPTLEVSEETFESISIVAELAGHCTSREASHRPDMSHVVNVLSTLVEKWRPMDEEPDYNSGIDFSHPLPQLLKVWKESEGKDSSYASEHSEGSIPAKPSGFADSFTSSDAR 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00972 970 MobiDBLite consensus disorder prediction 460 490 - -
Cca04g00972 970 Pfam Protein tyrosine and serine/threonine kinase 628 900 IPR001245 GO:0004672|GO:0006468
Cca04g00972 970 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Cca04g00972 970 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Cca04g00972 970 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cca04g00972 970 Gene3D Ribonuclease Inhibitor 26 324 IPR032675 -
Cca04g00972 970 SUPERFAMILY L domain-like 30 437 - -
Cca04g00972 970 Gene3D Ribonuclease Inhibitor 329 454 IPR032675 -
Cca04g00972 970 SMART serkin_6 625 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00972 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Cca04g00972 970 MobiDBLite consensus disorder prediction 577 598 - -
Cca04g00972 970 PANTHER OSJNBA0070M12.3 PROTEIN 5 970 - -
Cca04g00972 970 Gene3D Phosphorylase Kinase; domain 1 585 702 - -
Cca04g00972 970 MobiDBLite consensus disorder prediction 941 970 - -
Cca04g00972 970 SUPERFAMILY Protein kinase-like (PK-like) 602 909 IPR011009 -
Cca04g00972 970 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Cca04g00972 970 MobiDBLite consensus disorder prediction 491 508 - -
Cca04g00972 970 SMART LRR_typ_2 263 286 IPR003591 -
Cca04g00972 970 SMART LRR_typ_2 139 162 IPR003591 -
Cca04g00972 970 SMART LRR_typ_2 92 114 IPR003591 -
Cca04g00972 970 SMART LRR_typ_2 115 138 IPR003591 -
Cca04g00972 970 SMART LRR_typ_2 191 214 IPR003591 -
Cca04g00972 970 CDD STKc_IRAK 631 901 - -
Cca04g00972 970 Gene3D Transferase(Phosphotransferase) domain 1 703 920 - -
Cca04g00972 970 ProSiteProfiles Protein kinase domain profile. 625 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00972 970 PANTHER OSJNBA0070M12.3 PROTEIN 5 970 - -
Cca04g00972 970 MobiDBLite consensus disorder prediction 455 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00972 Cca-Chr4 10332542 10336694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00972 83 913 Receptor kinase-like Gene Family AT1G55610 29.571 1.27e-77 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca04g00972 PK_Tyr_Ser-Thr 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00972 - - gmx:100815045 1531.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00972 04 10332542 10336694 Cca04g00972 04 10332542 10336694 ECH