Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00968 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCATTTGGAGCTGCTATTCTTGTTAATCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCAAGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCATCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTGACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAACGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCTAATTACATGTGCCCTGAACTGCTTGCTGATATTCCGTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCGTTGAAAACATTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAACAGCATCTGAGGTGTTAAAGCACCCCTATTTGCAGCCTTATGTTGACCAATATCGTCCATCTTTCAGTCCTCCAACAACCTGTTCTCCTGAAAAACCAATTTCTGCTGTCAATGATCCTCGAAAAAATATGGCTGAAAGCCAAAACAGCAATAGTTCAAGTAGTGACAAAGATAGTTTGATGTCAAATGAGAAAAACATTGCAACAGCAGTACCTAAGTGTGATAACAAAGCCACTGAGACAGATCAAATATCAATTGATGATGATGGCTCAGACGAAGAAAATGGCTCTAGTAATGCCATTGCCAATACCAAAACAGCTGAGCAAGAGGTGATGAAACCATCTCATAATGAACACCACTCTAATGTTGAATCTAAGCAGCCAAAAACAATTAGAAACATAATGATGGCATTGAAAGAAGGAAAAGTTAGAGAAGCAACTTCTCCAATGAGAGGCAATCGCATAAAGCCTGGCGGTGTACCAACACAGAAAATAAGCACAGAAACATTGTCTAAATTGCCTAAACCTAATTTTATTGCTCCAAGTGTGAAGCCTAATTTAGATTCACCAACTGTTGCACTTGCAAGGGCAACCCCCGACTCTGCAAAAAGAATGCAGGGATCACATCATTCAAAGCATCAGTTGCTGATGACAGAAGCCTCACCAAAAGTTAAACCTAGACATGATTTGACTCCACCATCTGGACATGTCAAACAAGTAGAAGGAGATGGAGTTCCTCCCAAACCAAGGCAAAGGACTCCCCCAAGCTTACTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCTGGAATAGATGTTCCAAATGTAGCAAATGATACTGGGAAGCTAGGCACAAATAAAGTATCCCTGGAACCTGAGATGAGCCATTATCAATTGGCCAATGGCAATTTACCACATATTTCTAGACAGGTTACTAGAGAGCCTCATAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAGACAGACAGCAGCAATTCTGCCTCATCTTCAGTTTCTATACAAGGATGTGAACTTGCTGATGATGCAACAACTTTTATTGACATGAGAGAACAGCAGACACTTCCTGATCATGAGAATGTAAACCATATTGTAGGTGTGGAATCATGTCCTGACAGTGTGCCACCAACAACTTGTGCACATTGTAAGATGGTTGAAAAAGTTCCTAAAGAAACCTGTGGGGTTACCATGAATTTTCAGAATACTAGTAGTAGTAATGAGAAAGTGAGTTCCAGTTTAACTCGAGATCACCATGTTGAAGATTCCAAGCTAACACTTGCTTCAGAAGGTGGTCTTGTTATAAACCAGACAACTATATCTACTTGTGATAATAGATCTGCAGACCTATCTGCTGAAGCCAACAAAGAAATCAATGATTTTCAAGATATTTCCAAGGAAATGCCTTTAACCAAGTCTCCCAAACAAGCACCCCCAAGTTCTGGAGAAAAGTCTGTTCATGTAGAAGTTAGTCCAGTTAGTGAGCCTGATATAGTTAGCCAGCCAAGACTTGGATGCAAATCTCCTGGTGATGACAAATTCACAGTGAGGGAGCATCTGTCACCGGTGGCTGAAACTGTTCCTGTGGTTACCACCACTAAATTATCAGGACAGAAAGTTTTGCAAGATACAGGAACTGTGTTGCAGAATCCAGCATCAGAAAGGCCTGATACCGGCCATCTTCCTCCAGCCTTTGATGATGTTATCCATGTCATACGCCACAGTAGTTACCGCGTTGGAAGTGAGCAGCCAGTAAAGGAATCTGTCGAGATGGGAGTTCAAAATGTAGATGTTGGCAAGTTTATCAATGTTGTGAGGGATGATCTAGAAATGAGGAACATAACCTCACCTTTGACCCTCAAATCTTCAAGTTGCTCTGATGTTACAACCTTGAAATCAAATATTTCTGATCAGATGGAAATGAACAACTTGAACACTCCTCCCGTCCTTAAATCTTCAAGTTTCTCTGATACTTCTAGCTTGAAATCAAGCATTTCTGATCATCCTGGTTACAAGGAACAAGATGTGAGTATCCCTCCTTCTTCAGTTTCAGAACCTGATTCTGCTGAGCTCAGTAAATGCACCACACCTATGAATGAAGACAAACTACCAGCAAAGGAAACATTGGATGTGAAATCTTTCAGGCAGAGAGCAGAGGCACTTGAAGAGCTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGACAAGGTGTCTCCCAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGTGGACGCTCATCATGA 3069 0.419 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCSFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPSFSPPTTCSPEKPISAVNDPRKNMAESQNSNSSSSDKDSLMSNEKNIATAVPKCDNKATETDQISIDDDGSDEENGSSNAIANTKTAEQEVMKPSHNEHHSNVESKQPKTIRNIMMALKEGKVREATSPMRGNRIKPGGVPTQKISTETLSKLPKPNFIAPSVKPNLDSPTVALARATPDSAKRMQGSHHSKHQLLMTEASPKVKPRHDLTPPSGHVKQVEGDGVPPKPRQRTPPSLLRRPSFSGRMRLAGIDVPNVANDTGKLGTNKVSLEPEMSHYQLANGNLPHISRQVTREPHKAFERSSKGMQTDSSNSASSSVSIQGCELADDATTFIDMREQQTLPDHENVNHIVGVESCPDSVPPTTCAHCKMVEKVPKETCGVTMNFQNTSSSNEKVSSSLTRDHHVEDSKLTLASEGGLVINQTTISTCDNRSADLSAEANKEINDFQDISKEMPLTKSPKQAPPSSGEKSVHVEVSPVSEPDIVSQPRLGCKSPGDDKFTVREHLSPVAETVPVVTTTKLSGQKVLQDTGTVLQNPASERPDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTLKSSSCSDVTTLKSNISDQMEMNNLNTPPVLKSSSFSDTSSLKSSISDHPGYKEQDVSIPPSSVSEPDSAELSKCTTPMNEDKLPAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00968 1022 MobiDBLite consensus disorder prediction 921 939 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 884 911 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 709 730 - -
Cca04g00968 1022 Gene3D Transferase(Phosphotransferase) domain 1 90 326 - -
Cca04g00968 1022 CDD STKc_Nek 7 249 - -
Cca04g00968 1022 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Cca04g00968 1022 SUPERFAMILY Protein kinase-like (PK-like) 4 297 IPR011009 -
Cca04g00968 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cca04g00968 1022 MobiDBLite consensus disorder prediction 554 577 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 259 365 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 333 348 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 349 364 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 279 304 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 563 577 - -
Cca04g00968 1022 MobiDBLite consensus disorder prediction 884 944 - -
Cca04g00968 1022 Coils Coil 959 985 - -
Cca04g00968 1022 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Cca04g00968 1022 MobiDBLite consensus disorder prediction 458 499 - -
Cca04g00968 1022 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 860 - -
Cca04g00968 1022 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 929 1005 - -
Cca04g00968 1022 SMART serkin_6 8 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00968 1022 Pfam Protein kinase domain 8 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00968 1022 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 860 - -
Cca04g00968 1022 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 929 1005 - -
Cca04g00968 1022 ProSiteProfiles Protein kinase domain profile. 8 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00968 Cca-Chr4 10284457 10290444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00968 9 254 MAP Kinase Kinase Gene Family AT4G26070 32.714 7.62e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca04g00968 Pkinase 2.6e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00968 K08857 - gmx:100818747 1678.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00968 04 10284457 10290444 Cca04g00968 04 10284457 10290444 ECH
Cca10g00655 10 7176241 7184437 Cca04g00968 04 10284457 10290444 PCT