Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00963 ATGACAACGACATACCCCAAACCCTCGGAGATTCTGTGGAAGAAGGAGCTCTGCAACTCTGTCAGCCTCATCGGTGTGGTGGCCGCGGCTGTCGAACTCAAACACCTCCCCTCCGGCAAGGAGTTGAATCCAGTAAGGAAGATGCACTTCAGAGGAGCAAGGATTTTCGCTGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCAAAATCTGGAGGATTAA 231 0.4935 MTTTYPKPSEILWKKELCNSVSLIGVVAAAVELKHLPSGKELNPVRKMHFRGARIFAAVMEDLLAKGMKNAQNLED 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00963 76 Pfam Pectinacetylesterase 41 73 IPR004963 GO:0016787
Cca04g00963 76 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 3 43 IPR011344 GO:0003697|GO:0006260
Cca04g00963 76 Coils Coil 68 76 - -
Cca04g00963 76 PANTHER OS03G0633900 PROTEIN 3 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00963 Cca-Chr4 10243790 10244319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00963 14 73 Carbohydrate Esterase AT4G19410 45.000 2.98e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00963 - - ccaj:109813545 76.2553