Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00960 ATGTccgcctcgcgcgctccccccgccgccgccgccaccAACCCCTCCGACCAGATCATGCACTCTATGAAGCGCCAACTCCCCTTCTCCTCCATGAAACCGCCTTTCCTCGCCGCCGGCGACTACCACCGCTTCGCCCCCGACCACCGCCGGGCCCTCGACCAAGAACCGGAGGCCATCGTCGTCAAGACTCCCCAACTGAAGCGAAAGAGTGAAGTGGCTGATTTTGAAGCTGATTCTGGCGATAGGATGACTCCCGGATCTGCTGAAGCAGCTAATAGTCCTTTTCAGACACCTGTTTCAGGAAAGATGGGAAAGGGAGGCAAATCCTCTAGGCTGACAAAATGTAACAGGCCTGGAGCTCAAACCTCAGGCTCAAATATTGGTTCTCCAGCGGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCCGATACATTAGAGGTGCAAAAGAGGAGAATATATGATATAACCAATGTTCTTGAAGGGATTGGCCTGATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGAGGAGCACCGGTTAGATGAGCAAATAAGGGAGATGCAAGAAAGACTGCGGGATCTTAGTGAAGATGAAAACAACGAAAAGTTGCTTTTTGTGACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCGCATGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGTTGATATTTCACCCAAACTTCCATCCAGTCCAGATGTTAACAAGCATCAATCAACGATGGTCCCAGAGGATAGAGGGAAGGACATAGAAGTGCAGGGACAAGAAGTTCAAGGGCCCAGTTCAGATTTTGCTGCCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAATCTGATTACTGGCTTTTATCAGAAGCTGAGGTTTGCATAACTGACATGTGGAGAACAGAACCTGAAGTTGAATGGAATGAACTGGATCCTCTTCAAGGAGATTGTTGTATTACTCGCGAGAACACTACGACCCCAAGTCAACCTTCAAATGTAGCTGAAGTGTCTTCCGCGCCTAAACCTACTGTTGGAGGTTGA 1392 0.4476 MSASRAPPAAAATNPSDQIMHSMKRQLPFSSMKPPFLAAGDYHRFAPDHRRALDQEPEAIVVKTPQLKRKSEVADFEADSGDRMTPGSAEAANSPFQTPVSGKMGKGGKSSRLTKCNRPGAQTSGSNIGSPAGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMEEHRLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDISPKLPSSPDVNKHQSTMVPEDRGKDIEVQGQEVQGPSSDFAASQDFVSGIMKIVPSDVASESDYWLLSEAEVCITDMWRTEPEVEWNELDPLQGDCCITRENTTTPSQPSNVAEVSSAPKPTVGG 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00960 463 Coils Coil 221 262 - -
Cca04g00960 463 Gene3D - 215 325 - -
Cca04g00960 463 Coils Coil 159 179 - -
Cca04g00960 463 Gene3D - 137 210 IPR036388 -
Cca04g00960 463 PANTHER TRANSCRIPTION FACTOR E2FB 20 454 - -
Cca04g00960 463 MobiDBLite consensus disorder prediction 115 134 - -
Cca04g00960 463 MobiDBLite consensus disorder prediction 337 359 - -
Cca04g00960 463 PANTHER TRANSCRIPTION FACTOR E2F 20 454 IPR015633 GO:0000978|GO:0006357
Cca04g00960 463 MobiDBLite consensus disorder prediction 438 455 - -
Cca04g00960 463 CDD E2F_DD 219 325 IPR032198 GO:0046983
Cca04g00960 463 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Cca04g00960 463 MobiDBLite consensus disorder prediction 71 135 - -
Cca04g00960 463 MobiDBLite consensus disorder prediction 7 22 - -
Cca04g00960 463 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Cca04g00960 463 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g00960 463 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Cca04g00960 463 MobiDBLite consensus disorder prediction 438 463 - -
Cca04g00960 463 SUPERFAMILY E2F-DP heterodimerization region 222 325 IPR037241 -
Cca04g00960 463 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00960 Cca-Chr4 10211420 10217455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00960 18 448 E2F-DP Transcription Factor Family AT5G22220 57.484 9.75e-159 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Cca04g00960 E2F_CC-MB 6.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00960 K06620 - gmx:100819817 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00960 04 10211420 10217455 Cca04g00960 04 10211420 10217455 ECH