Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00957 ATGTCTTCCAATAAGAAAACTCTTCTTAGAACCGTTTTCACAGCAAACGGAACCTGTGGTTGCACCAAAACTAAGGCCTCCGAAGTGCACGAACCAACCccaaaaccaaaaccaaaaacaaaaccaacaccaaaaccTCACCACATTCTCCCAAAGCCAAACCTTAGTAGCATGGCCTCTTCCACCACTTCCCTCGACCACGTGGATGAAGAAGAGTTCACCTCCACCACAATATCCGAACCTGACACTTTTCATGATTacagcaacaacaataatagtaacaaagacaacaacGTTGTACTCAAACGAAGCCCCCTCGTGGATAGCGTGGCCATCGAGAAGGACTCTTCCAACCCATATCATGATTTCCGACACTCCATGCTCCAAATGATCTTCGAGAAGGAGATCGAGTCCGAGGACGATCTTCAAGATCTTCTACAATGCTTTCTTCATCTAAACGCGCCATGCCACCACCACATCATTGTTAAAGCCTTCAACGAGATCTGCGACGAAGCTTTTCCTCCCAAGAGATTGTTTGTGCAAACACAAGTATTGCTTCATGGCAATGGATGA 573 0.4101 MSSNKKTLLRTVFTANGTCGCTKTKASEVHEPTPKPKPKTKPTPKPHHILPKPNLSSMASSTTSLDHVDEEEFTSTTISEPDTFHDYSNNNNSNKDNNVVLKRSPLVDSVAIEKDSSNPYHDFRHSMLQMIFEKEIESEDDLQDLLQCFLHLNAPCHHHIIVKAFNEICDEAFPPKRLFVQTQVLLHGNG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00957 190 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 1 178 - -
Cca04g00957 190 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 110 169 IPR006458 -
Cca04g00957 190 ProSiteProfiles OVATE domain profile. 112 171 IPR006458 -
Cca04g00957 190 MobiDBLite consensus disorder prediction 77 98 - -
Cca04g00957 190 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 178 IPR038933 GO:0045892
Cca04g00957 190 MobiDBLite consensus disorder prediction 20 98 - -
Cca04g00957 190 Pfam Transcriptional repressor, ovate 116 171 IPR006458 -
Cca04g00957 190 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00957 Cca-Chr4 10197778 10198686 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca04g00957 Ovate 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00957 - - ccaj:109799084 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00957 04 10197778 10198686 Cca04g00957 04 10197778 10198686 ECH
Cca10g00652 10 7144739 7146002 Cca04g00957 04 10197778 10198686 PCT