Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00937 ATGGTAGATCATCCACCCGGGTTTCGTTTCTTTCCGACAGAAGAAGAGCTAGTGGGGTTCTACCTACAGAAGAAGCTACAAGGGCAAAGAAATAGTTTAGCCTCAGCCATAGACAGTGTTATTCCGGTTATTGACATCAATGGTGTTGAGCCGTGGAACCTTCCAACACATGCTGGGGAGCGTTGTCGCGGGGACACAGAGCAATGGTTTTTCTTTTGTCCCGGTCAAGAGAGAGAAGCCAGGGGAGGCAGACCCAGCAGAACCACTGCTTGTGGGTACTGGAAGGCCACGGGCTCCCCTGGCTACGTTTACTCTTCTCATAATAGAGTCATTGGGATGAAGAAATCCATGGTCTTCTACAAAGGGAAAGCTCCCTTGGGAACAAAAACTGAATGGAAGATGAATGAGTATAGAGCCATTGAATTCTCCAATCAATCCACCCCTCGGTTGAGAAGGGAATTCAGCTTGTGTCGGGTGTATGTGATATCGGGAAGCTTTCGAGCATTTGATCGACGGCCACTAGAGAGGGAAGGAGCAGAGTCGCAGAGAATTGTGGCGCAGCAAACGGCAAGAGAGGATGGATCCAGTTCATCTCAGAATTCTCACTTGGGTGGAGTCTATAGCCTTCAGGTGGCAGAGGGTGGAGACTTAGTTTGGAACCTAAATGTTAATACTGAGGTTCAACTCCAACAACCGCTCTGGGAATTCGAATGGGAACAATTTAATTCCCTCTAG 735 0.4844 MVDHPPGFRFFPTEEELVGFYLQKKLQGQRNSLASAIDSVIPVIDINGVEPWNLPTHAGERCRGDTEQWFFFCPGQEREARGGRPSRTTACGYWKATGSPGYVYSSHNRVIGMKKSMVFYKGKAPLGTKTEWKMNEYRAIEFSNQSTPRLRREFSLCRVYVISGSFRAFDRRPLEREGAESQRIVAQQTAREDGSSSSQNSHLGGVYSLQVAEGGDLVWNLNVNTEVQLQQPLWEFEWEQFNSL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00937 244 Pfam No apical meristem (NAM) protein 5 138 IPR003441 GO:0003677|GO:0006355
Cca04g00937 244 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Cca04g00937 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 90 4 196 - -
Cca04g00937 244 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Cca04g00937 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 196 - -
Cca04g00937 244 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00937 Cca-Chr4 9975376 9976586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00937 7 242 NAC Transcription Factor Family AT3G44350 54.694 5.71e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g00937 NAM 9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00937 - - ccaj:109799065 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00937 04 9975376 9976586 Cca04g00937 04 9975376 9976586 ECH
Cca10g00639 10 6970786 6972472 Cca04g00937 04 9975376 9976586 PCT