Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00926 ATGCCCCGGGGAAAAGCAAATTCTTCGACAGCTGCTAAGCCATCCAAGCCTGAAAAGCCGGTTGAATCCGATGAGAAGGTTGATTTTAAGGAGGCAAATGATACCGAGGAAGCAATGgaagaagaaattgagtatgaagaagtagaagaagaagaggaagtggaagaaatagacgaggaggtggaggtggaagaagaagaagaggaggaagaagaggaagacgaggaggaagaagaagaagaggttgaagaagtggaagaagatgaTTCCATTCAAAACCATAGCAGTGATGATGCAAAGGTGGAAGATGAGGATGAAAAGAAAATGCATGCCAAACTTCTTTCTCTTCCTCCTCATGGTTCGGAAGTATACATTGGTGGCATTCCTCATGGTATCTCAAATGATGATTTGAAATCATTTTGTGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGGGTTCTTCCGAGAACAAGGGCTTTGGTTTTGTGACCTTTAGAAGTGTGGAATTAGCTTCTAAAGCCATTGAAGAGCTGAATCATACAGAATTTAGGGGTAAAAAAATAAAATGTTCGACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCAAGAAGCTGGGGCGAGGAAGATCTGAGGAAGATTGTAACTGAGGTTGGACCTGGGGTTACTGGTGTAGAACTAGTCAGGGATTTGAAGAACACCAACAATAACCGTGGCTTTGCTTTTATTGACTATCATAATCATGCATGTGCCGAGTATTCAAAGCAAAAGATGATGAGCCCATCATTTAAGCTAGATGACAATACTCCTACAGTTAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTACATCTCAGGTGAAGGCAGTATATGTGAAGAATCTGCCGAAGAATGTAACTCAAGAGCAGTTAAAGAAGCTTTTTGAACGCCATGGGAAGATTACAAAGGTGGTTCTTCCACCAACAAAGTCTGGACAGGAAAAGAACAGAATTGGATTTGTACATTTTGCAGAGAGGTCAAATGCCATGAAAGCATTGAAAAGCCCTGAAAGATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTGGCAAAACCACAGTCTGATCAAAAGTCCGGAGGATCACACACACAGAAGCCAGGACCTGGATTGCTTCCAAGCTATCCACCAAATGTTGGTTATGGTTTGGTTGGGGGTGCCTATGGAGCACTTGGTGCAGGATATGCTGCTCCAGGTCTTGCGCAGCCTTTGCTATATGGAGGAGGTCAAACTCCCGCTGGAATGGCCATGATGCCTATGCTTTTGGCTGATGGACGGATTGGCTATGTCTTGCAACAACCAGGAATGCAGCCACAAGCCCCACCCTCACATCATAGAGGTGGCAGGAGTGGTAGCAGTTGGAGTGGTAACAGGAGTGGTGGCCCTTCAAATAAGGGAAGGCACAACAATGATGGTGGTCAAGGGCGCAGATACCGTCCATATTAG 1506 0.4017 MPRGKANSSTAAKPSKPEKPVESDEKVDFKEANDTEEAMEEEIEYEEVEEEEEVEEIDEEVEVEEEEEEEEEEDEEEEEEEVEEVEEDDSIQNHSSDDAKVEDEDEKKMHAKLLSLPPHGSEVYIGGIPHGISNDDLKSFCERIGEVAEVRVMKGKGSSENKGFGFVTFRSVELASKAIEELNHTEFRGKKIKCSTSQAKHRLFIGNVPRSWGEEDLRKIVTEVGPGVTGVELVRDLKNTNNNRGFAFIDYHNHACAEYSKQKMMSPSFKLDDNTPTVSWADPKNADSSATSQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPTKSGQEKNRIGFVHFAERSNAMKALKSPERYELEGQILECSLAKPQSDQKSGGSHTQKPGPGLLPSYPPNVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRSGSSWSGNRSGGPSNKGRHNNDGGQGRRYRPY 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00926 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 283 IPR000504 GO:0003723
Cca04g00926 501 SUPERFAMILY RNA-binding domain, RBD 118 287 IPR035979 GO:0003676
Cca04g00926 501 SUPERFAMILY RNA-binding domain, RBD 290 390 IPR035979 GO:0003676
Cca04g00926 501 MobiDBLite consensus disorder prediction 453 501 - -
Cca04g00926 501 MobiDBLite consensus disorder prediction 1 107 - -
Cca04g00926 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 475 - -
Cca04g00926 501 Gene3D - 202 282 IPR012677 -
Cca04g00926 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Cca04g00926 501 MobiDBLite consensus disorder prediction 34 91 - -
Cca04g00926 501 MobiDBLite consensus disorder prediction 372 393 - -
Cca04g00926 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Cca04g00926 501 MobiDBLite consensus disorder prediction 92 107 - -
Cca04g00926 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
Cca04g00926 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 264 IPR000504 GO:0003723
Cca04g00926 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Cca04g00926 501 PANTHER RNA RECOGNITION MOTIF 1 475 - -
Cca04g00926 501 SMART rrm1_1 296 369 IPR000504 GO:0003723
Cca04g00926 501 SMART rrm1_1 202 279 IPR000504 GO:0003723
Cca04g00926 501 SMART rrm1_1 122 195 IPR000504 GO:0003723
Cca04g00926 501 MobiDBLite consensus disorder prediction 17 33 - -
Cca04g00926 501 MobiDBLite consensus disorder prediction 466 489 - -
Cca04g00926 501 CDD RRM_SF 123 195 - -
Cca04g00926 501 Coils Coil 29 88 - -
Cca04g00926 501 Gene3D - 5 201 IPR012677 -
Cca04g00926 501 Gene3D - 284 391 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00926 Cca-Chr4 9866115 9872472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00926 123 462 Eukaryotic Initiation Factors Gene Family AT4G34110 24.603 8.27e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00926 K13161 - gmx:100785076 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00926 04 9866115 9872472 Cca04g00926 04 9866115 9872472 ECH