Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00926 | ATGCCCCGGGGAAAAGCAAATTCTTCGACAGCTGCTAAGCCATCCAAGCCTGAAAAGCCGGTTGAATCCGATGAGAAGGTTGATTTTAAGGAGGCAAATGATACCGAGGAAGCAATGgaagaagaaattgagtatgaagaagtagaagaagaagaggaagtggaagaaatagacgaggaggtggaggtggaagaagaagaagaggaggaagaagaggaagacgaggaggaagaagaagaagaggttgaagaagtggaagaagatgaTTCCATTCAAAACCATAGCAGTGATGATGCAAAGGTGGAAGATGAGGATGAAAAGAAAATGCATGCCAAACTTCTTTCTCTTCCTCCTCATGGTTCGGAAGTATACATTGGTGGCATTCCTCATGGTATCTCAAATGATGATTTGAAATCATTTTGTGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGGGTTCTTCCGAGAACAAGGGCTTTGGTTTTGTGACCTTTAGAAGTGTGGAATTAGCTTCTAAAGCCATTGAAGAGCTGAATCATACAGAATTTAGGGGTAAAAAAATAAAATGTTCGACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCAAGAAGCTGGGGCGAGGAAGATCTGAGGAAGATTGTAACTGAGGTTGGACCTGGGGTTACTGGTGTAGAACTAGTCAGGGATTTGAAGAACACCAACAATAACCGTGGCTTTGCTTTTATTGACTATCATAATCATGCATGTGCCGAGTATTCAAAGCAAAAGATGATGAGCCCATCATTTAAGCTAGATGACAATACTCCTACAGTTAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTACATCTCAGGTGAAGGCAGTATATGTGAAGAATCTGCCGAAGAATGTAACTCAAGAGCAGTTAAAGAAGCTTTTTGAACGCCATGGGAAGATTACAAAGGTGGTTCTTCCACCAACAAAGTCTGGACAGGAAAAGAACAGAATTGGATTTGTACATTTTGCAGAGAGGTCAAATGCCATGAAAGCATTGAAAAGCCCTGAAAGATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTGGCAAAACCACAGTCTGATCAAAAGTCCGGAGGATCACACACACAGAAGCCAGGACCTGGATTGCTTCCAAGCTATCCACCAAATGTTGGTTATGGTTTGGTTGGGGGTGCCTATGGAGCACTTGGTGCAGGATATGCTGCTCCAGGTCTTGCGCAGCCTTTGCTATATGGAGGAGGTCAAACTCCCGCTGGAATGGCCATGATGCCTATGCTTTTGGCTGATGGACGGATTGGCTATGTCTTGCAACAACCAGGAATGCAGCCACAAGCCCCACCCTCACATCATAGAGGTGGCAGGAGTGGTAGCAGTTGGAGTGGTAACAGGAGTGGTGGCCCTTCAAATAAGGGAAGGCACAACAATGATGGTGGTCAAGGGCGCAGATACCGTCCATATTAG | 1506 | 0.4017 | MPRGKANSSTAAKPSKPEKPVESDEKVDFKEANDTEEAMEEEIEYEEVEEEEEVEEIDEEVEVEEEEEEEEEEDEEEEEEEVEEVEEDDSIQNHSSDDAKVEDEDEKKMHAKLLSLPPHGSEVYIGGIPHGISNDDLKSFCERIGEVAEVRVMKGKGSSENKGFGFVTFRSVELASKAIEELNHTEFRGKKIKCSTSQAKHRLFIGNVPRSWGEEDLRKIVTEVGPGVTGVELVRDLKNTNNNRGFAFIDYHNHACAEYSKQKMMSPSFKLDDNTPTVSWADPKNADSSATSQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPTKSGQEKNRIGFVHFAERSNAMKALKSPERYELEGQILECSLAKPQSDQKSGGSHTQKPGPGLLPSYPPNVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRSGSSWSGNRSGGPSNKGRHNNDGGQGRRYRPY | 501 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00926 | 501 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 201 | 283 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | SUPERFAMILY | RNA-binding domain, RBD | 118 | 287 | IPR035979 | GO:0003676 | |
Cca04g00926 | 501 | SUPERFAMILY | RNA-binding domain, RBD | 290 | 390 | IPR035979 | GO:0003676 | |
Cca04g00926 | 501 | MobiDBLite | consensus disorder prediction | 453 | 501 | - | - | |
Cca04g00926 | 501 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Cca04g00926 | 501 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 1 | 475 | - | - | |
Cca04g00926 | 501 | Gene3D | - | 202 | 282 | IPR012677 | - | |
Cca04g00926 | 501 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 295 | 373 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | MobiDBLite | consensus disorder prediction | 34 | 91 | - | - | |
Cca04g00926 | 501 | MobiDBLite | consensus disorder prediction | 372 | 393 | - | - | |
Cca04g00926 | 501 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 199 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | MobiDBLite | consensus disorder prediction | 92 | 107 | - | - | |
Cca04g00926 | 501 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 193 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 203 | 264 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 297 | 364 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | PANTHER | RNA RECOGNITION MOTIF | 1 | 475 | - | - | |
Cca04g00926 | 501 | SMART | rrm1_1 | 296 | 369 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | SMART | rrm1_1 | 202 | 279 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | SMART | rrm1_1 | 122 | 195 | IPR000504 | GO:0003723 | |
Cca04g00926 | 501 | MobiDBLite | consensus disorder prediction | 17 | 33 | - | - | |
Cca04g00926 | 501 | MobiDBLite | consensus disorder prediction | 466 | 489 | - | - | |
Cca04g00926 | 501 | CDD | RRM_SF | 123 | 195 | - | - | |
Cca04g00926 | 501 | Coils | Coil | 29 | 88 | - | - | |
Cca04g00926 | 501 | Gene3D | - | 5 | 201 | IPR012677 | - | |
Cca04g00926 | 501 | Gene3D | - | 284 | 391 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00926 | Cca-Chr4 | 9866115 | 9872472 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00926 | 123 | 462 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.603 | 8.27e-14 | 72.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00926 | K13161 | - | gmx:100785076 | 705.671 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00926 | 04 | 9866115 | 9872472 | Cca04g00926 | 04 | 9866115 | 9872472 | ECH |