Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00925 ATGGCGGCGGAGGCGGAGGAGCTGCCACGGGCCATCGTGCGGCGCGTGGTGAAGGATAAGCTGTCTCGTTGCTCCGAAGACGGAGACATTTCCGTCAGCAAAGACGGTCTTCTCGCATTCTCCGAAAGCGCCAGAATCTTCATCCACTACCTTTCTGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTATCAATGCTGAGGATGTTTTCAAAGCTCTTGAAGATACTGAGTTTCCCGAGTTTATTCGCCCTCTAAAAGCTTCTCTTGAAGAGTTTAGAAAGAAGAATGCTGGAAAGAAAGCAGCAGGGTCAAAGGGAAAGGAAGATGAGGCAAGAAAGAAAAGGAAGTTGGAAGGTGAGTCACCTGGTAAAGGTGAGGGTTCTAATAAAGGTGAGGATGCTGATAAAGATGAGTGTTCCGACAAAGGTGAGGGTGGTGATGACCAAATGGACGAATGA 468 0.4829 MAAEAEELPRAIVRRVVKDKLSRCSEDGDISVSKDGLLAFSESARIFIHYLSATANDICKESKRQIINAEDVFKALEDTEFPEFIRPLKASLEEFRKKNAGKKAAGSKGKEDEARKKRKLEGESPGKGEGSNKGEDADKDECSDKGEGGDDQMDE 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00925 155 Coils Coil 59 79 - -
Cca04g00925 155 MobiDBLite consensus disorder prediction 96 155 - -
Cca04g00925 155 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 3 146 - -
Cca04g00925 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 7 76 IPR003958 -
Cca04g00925 155 Gene3D Histone, subunit A 2 148 IPR009072 GO:0046982
Cca04g00925 155 MobiDBLite consensus disorder prediction 96 146 - -
Cca04g00925 155 SUPERFAMILY Histone-fold 8 123 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00925 8 96 CCAAT-HAP3 Transcription Factor Family AT4G14540 31.461 1.20e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca04g00925 CBFD_NFYB_HMF 2.4e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00925 K02326 - gmx:100306382 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00925 04 9862743 9865060 Cca04g00925 04 9862743 9865060 ECH