Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00918 ATGGCGAGCCAAAGAATAGGAGAAACTGGTTTGTCAGAGTCAGGACCTTCAACTCACCATGTCCCTTATGGAGTTCTTCATGGAATTAATACCCCACCATCAGGCCTAATGAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCATGGAATTAAGATTAGAAATGATGAAGCCAAAGCATCAGCTTTATTCACAGGAAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCTATGAGATTCCACCAAACCTCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCGGTCAAGCAAAACTGAGCTTCAGTTTGAAACAGAATCTCCAATTAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCAGCAACAACAACAGGAGACAGCAACTGATGCCTCAAGAAAAGGCACATCACAGAATCAATCAGCAGCAAAATTATCTCAGGAAAAGAAGAAAGGAGCAGGTTCCACATCAGAGAAGCAACTTGATGCAAAGGCACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTTAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCGAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAGAGAGCTCGTTCTCAGGGACTGTTTATGGGTTGTGGTGGTGCTGGTGGCAATATAAGTTCAGGAGCTGCTATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACCAGCGGCACATGGCGGAGCTCCGGACGGGGCTGCAGGCGCCGCTGTCGGACGGCGAACTGAGAGTGGTTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTCAAAGGGGTGGCTGCTAAATCAGATGTGTTTCACCTTATTAATGGCATGTGGACTTCTCCAGCTGAGAGATGCTTCCTATGGATTGGTGGTTTTAAACCATCAGAACTCATCACAATGTTGATACAACAGTTGGACCTCCTAGCAGAGCAGCAAATTATGGGCATATATGGGCTCCGGCAATCGTCAGTGCAAGCAGAAGAGGCTCTCACTCAAGGTCTTGAACAGCTTCAACACTCTTTAGTTGACACCATCGCCGGCGGCTCTATCGGCGGCGATGGTGTGCAACAGATGATGGCAGCCATGGGAAAGCTTGCCAACCTTGAAGGATTTGTTGGTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTACTGACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATAGCCGTCTTAGAGCACTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAGCGATGATAACTCATGCCAAACAACCACGGAACTGCAAATGGTTCATCCTTCTCAGAATCATTTCTCCACTTTCTAA 1467 0.4601 MASQRIGETGLSESGPSTHHVPYGVLHGINTPPSGLMNQGSAFDFGELEEAIVLHGIKIRNDEAKASALFTGRPSATLEMFPSWPMRFHQTSRGGSKSGGESTDSGSGVNTRSSKTELQFETESPISIKASSSDHHQAFDQQQQQQETATDASRKGTSQNQSAAKLSQEKKKGAGSTSEKQLDAKALRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGLFMGCGGAGGNISSGAAMFDMEYARWLEDDQRHMAELRTGLQAPLSDGELRVVVDGYLSHYDEVFRLKGVAAKSDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIQQLDLLAEQQIMGIYGLRQSSVQAEEALTQGLEQLQHSLVDTIAGGSIGGDGVQQMMAAMGKLANLEGFVGQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYSRLRALSSLWASRPRETLISDDNSCQTTTELQMVHPSQNHFSTF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00918 488 PANTHER TRANSCRIPTION FACTOR TGA9 65 467 - -
Cca04g00918 488 SUPERFAMILY Leucine zipper domain 185 227 IPR046347 GO:0003700|GO:0006355
Cca04g00918 488 MobiDBLite consensus disorder prediction 89 167 - -
Cca04g00918 488 MobiDBLite consensus disorder prediction 81 184 - -
Cca04g00918 488 PANTHER TRANSCRIPTION FACTOR TGA9 65 467 - -
Cca04g00918 488 SMART brlzneu 181 257 IPR004827 GO:0003700|GO:0006355
Cca04g00918 488 Pfam bZIP transcription factor 184 226 IPR004827 GO:0003700|GO:0006355
Cca04g00918 488 CDD bZIP_HBP1b-like 185 236 - -
Cca04g00918 488 ProSiteProfiles DOG1 domain profile. 248 457 IPR025422 GO:0006351|GO:0043565
Cca04g00918 488 Coils Coil 211 231 - -
Cca04g00918 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Cca04g00918 488 Pfam Seed dormancy control 265 340 IPR025422 GO:0006351|GO:0043565
Cca04g00918 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Cca04g00918 488 Gene3D - 184 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00918 Cca-Chr4 9779283 9787811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00918 132 488 bZIP Transcription Factor Family AT1G08320 68.975 3.85e-180 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca04g00918 DOG1 3.4e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00918 04 9779283 9787811 Cca04g00918 04 9779283 9787811 ECH
Cca10g00626 10 6832004 6839713 Cca04g00918 04 9779283 9787811 PCT