Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00918 | ATGGCGAGCCAAAGAATAGGAGAAACTGGTTTGTCAGAGTCAGGACCTTCAACTCACCATGTCCCTTATGGAGTTCTTCATGGAATTAATACCCCACCATCAGGCCTAATGAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCATGGAATTAAGATTAGAAATGATGAAGCCAAAGCATCAGCTTTATTCACAGGAAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCTATGAGATTCCACCAAACCTCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCGGTCAAGCAAAACTGAGCTTCAGTTTGAAACAGAATCTCCAATTAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCAGCAACAACAACAGGAGACAGCAACTGATGCCTCAAGAAAAGGCACATCACAGAATCAATCAGCAGCAAAATTATCTCAGGAAAAGAAGAAAGGAGCAGGTTCCACATCAGAGAAGCAACTTGATGCAAAGGCACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTTAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCGAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAGAGAGCTCGTTCTCAGGGACTGTTTATGGGTTGTGGTGGTGCTGGTGGCAATATAAGTTCAGGAGCTGCTATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACCAGCGGCACATGGCGGAGCTCCGGACGGGGCTGCAGGCGCCGCTGTCGGACGGCGAACTGAGAGTGGTTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTCAAAGGGGTGGCTGCTAAATCAGATGTGTTTCACCTTATTAATGGCATGTGGACTTCTCCAGCTGAGAGATGCTTCCTATGGATTGGTGGTTTTAAACCATCAGAACTCATCACAATGTTGATACAACAGTTGGACCTCCTAGCAGAGCAGCAAATTATGGGCATATATGGGCTCCGGCAATCGTCAGTGCAAGCAGAAGAGGCTCTCACTCAAGGTCTTGAACAGCTTCAACACTCTTTAGTTGACACCATCGCCGGCGGCTCTATCGGCGGCGATGGTGTGCAACAGATGATGGCAGCCATGGGAAAGCTTGCCAACCTTGAAGGATTTGTTGGTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTACTGACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATAGCCGTCTTAGAGCACTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAGCGATGATAACTCATGCCAAACAACCACGGAACTGCAAATGGTTCATCCTTCTCAGAATCATTTCTCCACTTTCTAA | 1467 | 0.4601 | MASQRIGETGLSESGPSTHHVPYGVLHGINTPPSGLMNQGSAFDFGELEEAIVLHGIKIRNDEAKASALFTGRPSATLEMFPSWPMRFHQTSRGGSKSGGESTDSGSGVNTRSSKTELQFETESPISIKASSSDHHQAFDQQQQQQETATDASRKGTSQNQSAAKLSQEKKKGAGSTSEKQLDAKALRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGLFMGCGGAGGNISSGAAMFDMEYARWLEDDQRHMAELRTGLQAPLSDGELRVVVDGYLSHYDEVFRLKGVAAKSDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIQQLDLLAEQQIMGIYGLRQSSVQAEEALTQGLEQLQHSLVDTIAGGSIGGDGVQQMMAAMGKLANLEGFVGQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYSRLRALSSLWASRPRETLISDDNSCQTTTELQMVHPSQNHFSTF | 488 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00918 | 488 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 65 | 467 | - | - | |
Cca04g00918 | 488 | SUPERFAMILY | Leucine zipper domain | 185 | 227 | IPR046347 | GO:0003700|GO:0006355 | |
Cca04g00918 | 488 | MobiDBLite | consensus disorder prediction | 89 | 167 | - | - | |
Cca04g00918 | 488 | MobiDBLite | consensus disorder prediction | 81 | 184 | - | - | |
Cca04g00918 | 488 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 65 | 467 | - | - | |
Cca04g00918 | 488 | SMART | brlzneu | 181 | 257 | IPR004827 | GO:0003700|GO:0006355 | |
Cca04g00918 | 488 | Pfam | bZIP transcription factor | 184 | 226 | IPR004827 | GO:0003700|GO:0006355 | |
Cca04g00918 | 488 | CDD | bZIP_HBP1b-like | 185 | 236 | - | - | |
Cca04g00918 | 488 | ProSiteProfiles | DOG1 domain profile. | 248 | 457 | IPR025422 | GO:0006351|GO:0043565 | |
Cca04g00918 | 488 | Coils | Coil | 211 | 231 | - | - | |
Cca04g00918 | 488 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 183 | 227 | IPR004827 | GO:0003700|GO:0006355 | |
Cca04g00918 | 488 | Pfam | Seed dormancy control | 265 | 340 | IPR025422 | GO:0006351|GO:0043565 | |
Cca04g00918 | 488 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 188 | 203 | IPR004827 | GO:0003700|GO:0006355 | |
Cca04g00918 | 488 | Gene3D | - | 184 | 233 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00918 | Cca-Chr4 | 9779283 | 9787811 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00918 | 132 | 488 | bZIP Transcription Factor Family | AT1G08320 | 68.975 | 3.85e-180 | 507 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bZIP | Cca04g00918 | DOG1 | 3.4e-29 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00918 | K14431 | - | gmx:100101904 | 777.319 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00918 | 04 | 9779283 | 9787811 | Cca04g00918 | 04 | 9779283 | 9787811 | ECH | |
Cca10g00626 | 10 | 6832004 | 6839713 | Cca04g00918 | 04 | 9779283 | 9787811 | PCT |