Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00915 ATGGGTTTGATGGAGTGCAATGTAGAGAACAACAACAAGAATCTATACCTTCATGCTCCAACTTTCATTGAGTGGCTCAAACCATGTTCTTCCCCTCCTTCATATCTAAATTCCAACACCACAATACTAtcatcatcttcttctccttcttattcttcttcttattcCACTACTCACAACAATGAGTTTGCTCGAGAAAAAACCATCCAATTCCTTCCCATTTTGAGTGACAAGGCCTCAAGAGATGATGAGATGGAGGTGAAGAAAGAGGAAAAGGTTGAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTGAGACTAAAGGGCATCGtgatgatgatgatgagaagaagatgatTTTCCATGTTAAGGAAGAAGAAGAATCCTCAAAGAGAAGCTTATTCCATGGATGCTCCTTCAACCAAGAGAGAAGGTTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGCCCCATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATATAGGAAAGGACCAGACTCACTGAAAGGAACACAACCAGCTGCAATGTTAAGGTTACCATGTTACTGCTGTGCTCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCATTGAAGGACTTTAGAACCCTCCAAACTCATTACAAAAGAAAGCATGGCACAAAGCCATTCATGTGCAGAAAATGTGGCAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGTACTTGTGGCTCAGACTTCAAGCACAAAAGATCCCTTAAGGATCATATTAGGTCCTTTGGAAAGGGACATAACCCTCACCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTACTGGGTCTGATGAAGATGAAGTTAATAATGCTCATCATACATGA 981 0.3976 MGLMECNVENNNKNLYLHAPTFIEWLKPCSSPPSYLNSNTTILSSSSSPSYSSSYSTTHNNEFAREKTIQFLPILSDKASRDDEMEVKKEEKVEQVTVALHIGLPETKGHRDDDDEKKMIFHVKEEEESSKRSLFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNNAHHT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00915 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 188 IPR013087 -
Cca04g00915 326 SUPERFAMILY beta-beta-alpha zinc fingers 147 184 IPR036236 -
Cca04g00915 326 SUPERFAMILY beta-beta-alpha zinc fingers 231 265 IPR036236 -
Cca04g00915 326 Gene3D Classic Zinc Finger 160 183 - -
Cca04g00915 326 PANTHER ZINC FINGER PROTEIN WIP2 1 322 IPR043584 GO:0003700|GO:0010468
Cca04g00915 326 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 322 - -
Cca04g00915 326 Gene3D Classic Zinc Finger 202 297 - -
Cca04g00915 326 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Cca04g00915 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 265 IPR013087 -
Cca04g00915 326 SMART c2h2final6 208 240 IPR013087 -
Cca04g00915 326 SMART c2h2final6 161 183 IPR013087 -
Cca04g00915 326 SMART c2h2final6 245 265 IPR013087 -
Cca04g00915 326 Pfam Zinc finger, C2H2 type 161 180 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00915 Cca-Chr4 9714070 9718739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00915 13 313 C2H2 Transcription Factor Family AT1G08290 57.576 2.05e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g00915 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00915 - - gmx:100802773 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00915 04 9714070 9718739 Cca04g00915 04 9714070 9718739 ECH
Cca10g00622 10 6772301 6776129 Cca04g00915 04 9714070 9718739 PCT