Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00908 atgtataGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGCACGAAGACAATGAAGGTAATTACCCTAAAGCGTTTCAGCTTTACATGAACGCCTTGGAGTACTTCAAAACGCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTACCTCCGCCGGGCCGAGGAGATCCGGGCCGTCCTCGACGGCCCCGCAGGCCCCGCCTCCAACGGGGATGCAGCCGTCGCCACGCGGCCCAAGACCAAGCCCAAGGATGGCGACGCCGACGGGGAGGACCCCGAGCAGACCAAGCTCCGGGCCGGCCTCAACTCCGCGATCGTCCGCGAGAAGCCCAACGTCAAGTGGAACGACGTCGCGGGCCTCGAGAGCGCCAAGCAGGCCTTGCAGGAAGCCGTTATCTTACCCGTCAAGTTTCCTCAGTTCTTCACCGGTAAACGACGACCTTGGCGAGCGTTTTTGTTGTACGGACCACCGGGGACAGGTAAATCGTATCTGGCCAAGGCCGTCGCAACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAATCTTTTCCAAATGGCTCGCGAGAGTGCACCTTCTATCATATTCATTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGATCAGGCAATAAGGCGGCGTTTTGATAAGCGCATATACATACCCCTACCTGATAGGAAGGCTCGACAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACCTGGCTGAAAGTGATTTTGAACATTTGGCTCGCAGGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTCGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGGCCAAAGCAACAGAGTGCAATACAAATTACAATGCAGGAGCTTGCTACGAAAGGACTTGCTTCTCAGATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCTACAGTAAGCAAGGGTGACCTTGACATTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1296 0.4961 MYSNFKEQAIEYVKQAVHEDNEGNYPKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDGPAGPASNGDAAVATRPKTKPKDGDADGEDPEQTKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDRKARQHMFKVHLGDTPHNLAESDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQSAIQITMQELATKGLASQILPPPISRTDFDKVLARQRPTVSKGDLDIHERFTKEFGEEG 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00908 431 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 431 - -
Cca04g00908 431 SUPERFAMILY MIT domain 2 75 IPR036181 -
Cca04g00908 431 MobiDBLite consensus disorder prediction 90 107 - -
Cca04g00908 431 Pfam ATPase family associated with various cellular activities (AAA) 165 294 IPR003959 GO:0005524|GO:0016887
Cca04g00908 431 SMART smart 2 79 IPR007330 -
Cca04g00908 431 SMART AAA_5 160 296 IPR003593 -
Cca04g00908 431 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Cca04g00908 431 Gene3D - 296 411 - -
Cca04g00908 431 Gene3D - 6 74 - -
Cca04g00908 431 Pfam Vps4 C terminal oligomerisation domain 364 428 IPR015415 -
Cca04g00908 431 PANTHER AAA DOMAIN-CONTAINING 1 431 - -
Cca04g00908 431 MobiDBLite consensus disorder prediction 74 107 - -
Cca04g00908 431 CDD MIT_VPS4 4 74 IPR045253 -
Cca04g00908 431 ProSitePatterns AAA-protein family signature. 266 285 IPR003960 GO:0005524|GO:0016887
Cca04g00908 431 Gene3D - 123 418 IPR027417 -
Cca04g00908 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 427 IPR027417 -
Cca04g00908 431 CDD AAA 131 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00908 Cca-Chr4 9663291 9668602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00908 159 352 Calmodulin-binding Proteins AT3G56690 37.245 5.93e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00908 K12196 - gmx:100801165 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00908 04 9663291 9668602 Cca04g00908 04 9663291 9668602 ECH
Cca10g00618 10 6731700 6737484 Cca04g00908 04 9663291 9668602 ECH
Cca10g00618 10 6731700 6737484 Cca04g00908 04 9663291 9668602 PCT