Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00907 ATGGGGAGTGCCAAAATTTTAAGCCTTTTCATCCATCTGTTCATTGGGTACACATTGGTGAATGGATCCACCCCAAAGCATTATATAGTTTACATGGGAGATCATTCACACCCCAATTCAGAATCTGTGGTCAGAGCAAACCATGAGATATTAGCTACAGTTACTGGAAGCCTCAGTGGGGCAAAGTCAGCAGCACTCCACCACTACAGTAAAAGCTTTCAAGGCTTCTCAGCCATGATTACACCAGAGCAAGCTAATCAACTTGCAGAACATAACTCAGTAGTATCCGTTTTTGAGAGCAAAATGAATAAACTCCACACAACACATTCTTGGGATTTTCTTGGATTAGAGACTGTCTACAAGGGCAACCATAAAGCGCTGGGCACTATATCTGATGTCATTGTTGGTGTTGTTGACTCTGGAGTCTGGCCAGAGTCCGAAAGCTTCACTGATTATGGATTAGGTCCTGTGCCTAAAAAATTCAAGGGAGAGTGTGTTGGAGGGGATAATTTTACACTAGCCAATTGCAACAAGAAAATAATTGGTGCCCGGTTCTATTCAAAAGGGTTTGAAGCAGAAAATGGTCCTCTAGAGAGCCTTAACAAGACTTTTTTCCGGTCAGCACGAGATGAAAATGGACACGGATCACACACAGCTTCCACAATAGCAGGGTCCATTGTTGCTAATGTCAGCTTATTTGGCATTGCCAAAGGAACTGCTAGAGGTGGTGCTCCAGGTGCAAGACTTGCCATCTACAAGGCCTGTTGGTTTGGGTTTTGCAGTGATGCTGATATTCTTTCTGCCATGGATGATGCCATCCATGATGGAGTTGACATACTATCTCTTTCCCCTGGTCCTGACCCTCCCCAGCCTATTTACTTTGAGGATGCAGTCAGTGTAGGATCATTCCATGCATTCCAAAAGGGTGTTCTTGTTTCTGCTTCAGCTGGAAACTCAGTTTTTCCACGTACAGCATGCAATGTTGCTCCTTGGATCCTCACTGCTGCTGCTAGCACAATAGACAGGGATTTCAGTACAAATGTCCTTCTTGGTAACGCTAAGGTTTTAAAGGGTTCTTCTTTGAATCCAATAAGAATGGAGCAATCATATGGTTTGATATATGGAAGTGCTGCAGCAGCAGCCGGAGTTTCAGCAACGAACGCAAGCTTCTGCAAAAACAACACTCTAGATCCTACCTTAATCAAGGGTAAAATTGTGATATGTACTATTGAGCAATTCAGTGATGACAGACAAGCCAAGGCCATAGAAATAAGGCAAGGTGGGGGTGTTGGAATGATACTTATTGATCATAATGCCAAAGATATTGGTTTCCAATTTGTCATCCCTAGCACTCTCATTGGTCAGGATGCCGTAGAAGTGCTTCAAGCATATATAAAGACAGAGAAGAATCCCATTGCTAGAATCTACCCTACAATAACTGTAGTTGGTACAAAACCTGCACCAGAAATGGCAGCTTTTTCTTCCATTGGGCCAAATATAATAACACCAGAAATTATTAAGCCTGACATCACAGCACCTGGAGTGAATATTTTGGCAGCATGGTCTCCAGTTGCAACTGAAGCCACAGTTGAACAACGATCTGTCAACTATAACATCATTTCAGGAACATCAATGTCTTGCCCACACATAACCGCAGTTGCAGCAATTATAAAATCTCACCACCCTCACTGGGGTCCTGCAGCCATAAAGTCTGCAATAATGACAACAGCCACAGTTTTGGATAACACACACCGCATCATAGAAAGAGATCCAAATGGAACTCAAACCACACCATTTGACTATGGATCGGGACATGTTAACCCAGTTTCATCACTCAATCCTGGATTAGTATATGATTTTAATCTCCAAGATGTTCTGAATTTTCTGTGCAGCAATGGGGCAAACCCAGCACAACTTAAGAACTTCACTGGGGGTCTTACTCAATGTCATAAACCTCTTACAGCTTCCTACAACTTCAATTATCCTTCAATTGGTGTGTCCAAATTGAATGGAAATTTATCAGTTTATCGTACAGTTACTTATTATGGCCATGAGCCAACAATATATTCTGCAAGTGTTGAAAATCCATCTGGTGTGAAGGTTATAATTACTCCAGCAGAATTGAAGTTCTGGAAAACTGGGCAGAAGATAACTTTCAGGATTGATTTCTTCCCTTTCAAGAATAGCAATGGAAACTTTGTGTTTGGTGCCTTGATATGGAACAATGGGAAACAAAGGGTTAGGAGTCCTATTGGTCTTAACGTGCTATCTGCTTAA 2277 0.4207 MGSAKILSLFIHLFIGYTLVNGSTPKHYIVYMGDHSHPNSESVVRANHEILATVTGSLSGAKSAALHHYSKSFQGFSAMITPEQANQLAEHNSVVSVFESKMNKLHTTHSWDFLGLETVYKGNHKALGTISDVIVGVVDSGVWPESESFTDYGLGPVPKKFKGECVGGDNFTLANCNKKIIGARFYSKGFEAENGPLESLNKTFFRSARDENGHGSHTASTIAGSIVANVSLFGIAKGTARGGAPGARLAIYKACWFGFCSDADILSAMDDAIHDGVDILSLSPGPDPPQPIYFEDAVSVGSFHAFQKGVLVSASAGNSVFPRTACNVAPWILTAAASTIDRDFSTNVLLGNAKVLKGSSLNPIRMEQSYGLIYGSAAAAAGVSATNASFCKNNTLDPTLIKGKIVICTIEQFSDDRQAKAIEIRQGGGVGMILIDHNAKDIGFQFVIPSTLIGQDAVEVLQAYIKTEKNPIARIYPTITVVGTKPAPEMAAFSSIGPNIITPEIIKPDITAPGVNILAAWSPVATEATVEQRSVNYNIISGTSMSCPHITAVAAIIKSHHPHWGPAAIKSAIMTTATVLDNTHRIIERDPNGTQTTPFDYGSGHVNPVSSLNPGLVYDFNLQDVLNFLCSNGANPAQLKNFTGGLTQCHKPLTASYNFNYPSIGVSKLNGNLSVYRTVTYYGHEPTIYSASVENPSGVKVIITPAELKFWKTGQKITFRIDFFPFKNSNGNFVFGALIWNNGKQRVRSPIGLNVLSA 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00907 758 ProSitePatterns Serine proteases, subtilase family, serine active site. 542 552 IPR023828 -
Cca04g00907 758 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 18 753 - -
Cca04g00907 758 Gene3D Peptidase S8/S53 domain 132 624 IPR036852 GO:0004252|GO:0006508
Cca04g00907 758 Pfam Peptidase inhibitor I9 27 105 IPR010259 -
Cca04g00907 758 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Cca04g00907 758 PRINTS Subtilisin serine protease family (S8) signature 210 223 IPR015500 -
Cca04g00907 758 PRINTS Subtilisin serine protease family (S8) signature 541 557 IPR015500 -
Cca04g00907 758 CDD Peptidases_S8_3 104 578 IPR034197 -
Cca04g00907 758 CDD PA_subtilisin_like 347 475 - -
Cca04g00907 758 Pfam Subtilase family 131 323 IPR000209 GO:0006508|GO:0008236
Cca04g00907 758 Pfam Subtilase family 478 585 IPR000209 GO:0006508|GO:0008236
Cca04g00907 758 ProSiteProfiles Serine proteases, subtilase domain profile. 110 612 - -
Cca04g00907 758 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 106 IPR037045 -
Cca04g00907 758 Gene3D - 341 482 - -
Cca04g00907 758 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 18 753 IPR045051 -
Cca04g00907 758 Pfam PA domain 386 459 IPR003137 -
Cca04g00907 758 SUPERFAMILY Subtilisin-like 105 616 IPR036852 GO:0004252|GO:0006508
Cca04g00907 758 Pfam Fibronectin type-III domain 658 751 IPR041469 -
Cca04g00907 758 Gene3D - 629 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00907 Cca-Chr4 9657071 9662171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00907 28 751 Subtilisin-like Serine Gene Family AT2G04160 43.974 0.0 585
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00907 04 9657071 9662171 Cca04g00907 04 9657071 9662171 ECH