Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00896 GCTGTTACAAAAGCAAAGTTGGGTTATGATCCAATGGAGGTGAATCCTGAAGACATGGTTCGCTTTGCAATGGAAAAGCCTCAGATGATGGCTTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCGCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTATGTGAAATGTTGCTTATGGTGCAGGCGTACAAGGCTAATGTTATCTGCCCTAACAAACATCAATCTGATGCAGAGAAGTTTTATAATAATCGTCTTCTTGAGAGTGAGACATACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTTAGATCTGATATTCCATCTAGTTTTAAACTCGAGCCATCTGCCTATCAGCAACTGATCAACAACCTTGATCGAGATCTACAGTATGCTATAAGAGTGGAGGGTAAGAATAAGATTGATTTGGAATCTGTGTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAGTTAAGAGATGCGCCAATACGTGAAGAATGCCCTCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCATCAATTGTTACGGATGAAGTTTGCACTGCATGTGATTTTAATCGTCCAGGAAAGACTTGCTTACGCAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATTCATTAAAGACACAGATTGAATCAGAGATGGTTGATGATTCTGAGAACAACAACAACAAAGCCATGTCCCACTATTACGAGAAGAGGGCATCAAAATCTTTTCTTGACCTTCCCAAGTCAGAGCAACAAGCAAGACTGAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTGACAAACCAGTTACTGAACTCCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACAGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAGAACTGTCGAAGGCAAAGGCTAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATCATTCAGAATGCTCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCGGAAAATTTCACTTTTAAAACAAAAGACTCAAAGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGACGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATCAGGAAAACTTATGCAACTCACAGCGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCGGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATTAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTCTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACCTTAGAGGAATGCTATTCAGCTGTCGCTTCAGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCAGACAGTGAGTTGCTTGATTACATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGGCTAGCTGACTTTCTTGGTAATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGAGCACCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGGAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGGTCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTGTTGCAAATCCCGTCCCTAGGGTGGTTCATCCTGATTGGCTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGGAAATTAGTTGATGTCTTTAAGTCAATGAACCGGAATGAGCACTCAGAAAAGCATAATGACTCAAATGGTGTCCATCTTGTGATGGATGATGAGATTGTTAATGAGTTGGAGGACTTTGGAAACAAGGCCAGGAGTTCTACATGCAGACCTAGACCAATTATACGACATTATGAAGCTAATAATGAACGGCATTTGAGGAAGCTCAACGATCAAGAAGATTTGGAGCAACAGCATCATAATGATAATAGCAGTAAGGATGAGCTACTTTCACCATTACACCAAAATGAAATATTATGTGAAAATGTTGACAGAAATGTAGATTATCAAGGATGGCTTCAAATAAAGAAGCGAATGTGGAGAAATATTCTGGAACGGACAAGGAAGCGAAGATTGGAGAGTTCAAAGAAATCTGGCCGTTTAAATGGTGTTCTTGAACAAATGAATGGTAAGGGGAGTCAGGACAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAAAAAAGTGCCACTGGCAGATAATACAACTAGTTCCCAGTTCATTGATAGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCCATTTCTGTTCCTAGAGTCTTTTACCTAAATTCAAGATCACCAATTACTGAAGAATTTGTGGGTAAACGTGTCAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACCTGTATGAGGTATCAATTAATGAAATTCAATACGGGGAAGCAAACAAAAAACTTGCAGCTCTTCTGGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGAGTTTAATGCTATAGTCCAGCTCGGTTGTGTATGTAAGGTGGACAAAACTGCTAATAGACGTAGTCTTCAAGAACCATGGAATTTGAGTGAATTGCACATGAAGACCACAACTGAATGTCCTTATCTCGACCAATCTATACCCTACTTTTACTTTTACCATAGCATCTCTGAGGGACGAGCTATATATGTTGCATATTTTCCTTCATCAAAAGCAATAACTGTCGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCAACTTTTCTTGAAAGACAATTTCACGATGCTTGCCAAGCTTCGTCTATTGAGCCGCCTTTGAGGAATGACATTAATTTTAAGGTGGAATATGTTGCACATGTCAAGGATGCTGAAACAGTGATGCAAAGAGTGATAAATGGTCACAGTCGTGGGAGGGAAAATCATGCGCCTATGGTTGCTGTCATTGAATGTCCAGATGTTCAACTAGTAAAATTGGGCGTTCGTATTCTGGATGATTTTCCATGCCTGAGTATTCCTTATAATGCACGTGATAATCAGTATCAGATTCTTGGATGGCAACAAGTTGCGGCCAAAACTGGAATGCAACGTTGTGCTGCATCAATTCAATGGCTAAATAAGAGGATTGCTATCTCAAAATATGCCCATGTACCGTTGGGGAACTTTGAACTTGACTGGCTTGTATTTACTGCAGATATCTTCTTTTCAAGGGCATTGCATGATAACCAACAGGTACTTTGGATATCTGATGATGGCCTTCCAGATCTAGGTGGCATTAATGGTGAACAGTATTGTTTTGTTGACGAGGTTGACCAACCTGTGATTACGTATTCCGGAGCTTATAGAAATGTTACTGTGGAGCTAAAGATACACAACCTGGCTGTAAATGCTCTTCTCAAATGCAACCTAATTAATGAGATGGAAGGAGGCGCACTATTAGGATTTGGTCATGAATACGATTCTGGAGAATTTTCTATGAGTGATCAGAATGGTTTTGACAACTCTACCTCATGTGCACAAGCCTTTCGTGTCCTTAAACAGTTGATTCAACGGTGCCTTGCAGATGCAGTTACATCAGGAAATGTTTATGCAGATGCAATATTGCAAAATATATATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTGTTTGCAAACTTCTCAAAGATTATCATAGACACCGGGAAATGTGATCTGCCTAGAGCCAGGGCTTATTCTGACAGTTTGTTAAGAACTATACAATCTAGAGATCTATTTGAATGGGTTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCTTGGATCAGTATAACTATGGTGGAATACCAGCAAAATCTGATGAAGGCATGGATGATGAGTCTCGAGTAGGCATTATATCTAACTGGAATATTGCCGAATACTTGCCAAAAGAAGTCCAAGACCGTTTTGTTTACATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCACAAAAACTAGCAGCAATCAGGACCTCATTGCAGAATGAAGACTCCTGTACCCCATCAATTAACATTGGGGCTGCAGAGGCTTTTGAATCAGAAATAACAGAATATATCAAAGGGCAGATTAGCTCTTACTTTACACCCAAACTGCTAGAAATTGTTCACGATATTGGTCTTCACATGAAGGGGATGAGCAGATCAGAGAACAACCAGAGTATATCATCTGGCCTTCCTCAATTTATGGCTGATGTCCATAGAGGGGATGCTGCCTTGGAATTTGTCAAGCTTGTCTGTGTTGTACTGTTCATGGACCAAAGTGTGCAACATGAAGTTTTGGTTATGAAAAAGGTTTTGCTCAAATATATTGATGTCAGGGAGTTTGCTCCAGAAGCTGAGTTTCACAAACCTTGTCATTATTTCATCTTACCCGATGTCGTATGCAGCTATTGTAATGACTGCAGAGACTTGGATTTGTGCCGTGACACTGCTTTATTAACTGAGGAATGGCGTTGTGCGGTGCCACAGTGTGGCCAGCCTTATGACCGCGACGTGATGGAAAATACTCTTCTTCAGGTTGCGAGACAAAGAGAAAGGTTATACCAAGTCCAAGATCTGCTTTGTAATAAATGCAATCAGGTGAAAGCTGCACATTTGTCCGAGCAATGTGCATGTGCAGGCTCATTTAGGTCCAGCAGAGCAGGTTTACAAGTACCTAACGTGAAATGCATCCAAGCCCCTATTATGGACTTTGTTTACAATCAGAGAAATGTTAAAAAAACACTGACCCACGGCGACGCCTTCCAAATATATGGCGACCCTCTCATGGCGCATTCCGCGGAAAGCTTCAACGCCATGTCAAACGCAACGACGAGATCGGATACCGGCAACATCGGAAGGAGATAA 5565 0.4081 AVTKAKLGYDPMEVNPEDMVRFAMEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDAEKFYNNRLLESETYIGGHVECLESGVFRSDIPSSFKLEPSAYQQLINNLDRDLQYAIRVEGKNKIDLESVSNYDEVKNAIMEKLVKLRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYSLKTQIESEMVDDSENNNNKAMSHYYEKRASKSFLDLPKSEQQARLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGELSKAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYATHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGNTMVKDKGLRCQYIVASEPKGAPVSERAVPVAIFGTDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDVFKSMNRNEHSEKHNDSNGVHLVMDDEIVNELEDFGNKARSSTCRPRPIIRHYEANNERHLRKLNDQEDLEQQHHNDNSSKDELLSPLHQNEILCENVDRNVDYQGWLQIKKRMWRNILERTRKRRLESSKKSGRLNGVLEQMNGKGSQDRSHVSSYLKRLEVDLKKCHWQIIQLVPSSLIGQFFAWVVVDGSMHKIPISVPRVFYLNSRSPITEEFVGKRVNKTLPHGRHSYNLYEVSINEIQYGEANKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKTANRRSLQEPWNLSELHMKTTTECPYLDQSIPYFYFYHSISEGRAIYVAYFPSSKAITVVVVNPYQNKDLSPTFLERQFHDACQASSIEPPLRNDINFKVEYVAHVKDAETVMQRVINGHSRGRENHAPMVAVIECPDVQLVKLGVRILDDFPCLSIPYNARDNQYQILGWQQVAAKTGMQRCAASIQWLNKRIAISKYAHVPLGNFELDWLVFTADIFFSRALHDNQQVLWISDDGLPDLGGINGEQYCFVDEVDQPVITYSGAYRNVTVELKIHNLAVNALLKCNLINEMEGGALLGFGHEYDSGEFSMSDQNGFDNSTSCAQAFRVLKQLIQRCLADAVTSGNVYADAILQNIYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKCDLPRARAYSDSLLRTIQSRDLFEWVELEPLQFWCSLLFLDQYNYGGIPAKSDEGMDDESRVGIISNWNIAEYLPKEVQDRFVYIVSQFMYIPWNYAQKLAAIRTSLQNEDSCTPSINIGAAEAFESEITEYIKGQISSYFTPKLLEIVHDIGLHMKGMSRSENNQSISSGLPQFMADVHRGDAALEFVKLVCVVLFMDQSVQHEVLVMKKVLLKYIDVREFAPEAEFHKPCHYFILPDVVCSYCNDCRDLDLCRDTALLTEEWRCAVPQCGQPYDRDVMENTLLQVARQRERLYQVQDLLCNKCNQVKAAHLSEQCACAGSFRSSRAGLQVPNVKCIQAPIMDFVYNQRNVKKTLTHGDAFQIYGDPLMAHSAESFNAMSNATTRSDTGNIGRR 1854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00896 1854 Pfam Domain of unknown function (DUF1744) 1138 1507 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cca04g00896 1854 SUPERFAMILY DNA/RNA polymerases 88 729 IPR043502 -
Cca04g00896 1854 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1 1785 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cca04g00896 1854 Gene3D Palm domain of DNA polymerase 371 552 IPR023211 -
Cca04g00896 1854 Gene3D - 556 740 IPR042087 -
Cca04g00896 1854 SMART DUF1744_2 1121 1507 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cca04g00896 1854 Coils Coil 810 830 - -
Cca04g00896 1854 Pfam DNA polymerase family B 367 673 IPR006134 GO:0000166|GO:0003677
Cca04g00896 1854 Gene3D - 1 109 IPR036397 GO:0003676
Cca04g00896 1854 SUPERFAMILY Ribonuclease H-like 1 92 IPR012337 -
Cca04g00896 1854 CDD POLBc_epsilon 105 732 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00896 1 1788 Core DNA Replication Machinery Family AT2G27120 63.904 0.0 2296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00896 K02324 - gmx:100812003 3152.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00896 04 9450936 9469569 Cca04g00896 04 9450936 9469569 ECH