Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00895 ATGGACACCGAGGATCTAACCGACGACCTCCACAGCCTCAGCTTCGCCTCCACCGCCGACATCAAGCGCAGCACAAGCTTCAGctcctcggccaccaccgtcaccccctccacctcctcccacttcctcccctccgccaacccccacgcgccctcctccGACCCCTGCAGAGCCTTCGCCAACCGGATCCGCCCCCTCTCCCTCTCCCACCTCCGCTTCACGCGCCGCCTCGGCTCCGGCGACATGAGCGCCGTCTACCTCGCCCTCCCCAGGGACGAGGAAGCGCCCTCCGCCGCCCTCTTCGCCGCCAAGGTCATGGAGAAGGAGGACCTCGCCCGAAGGAACAAGGAAGGCAGAGCCACCACCGAGAGGGAAATTCTCCAAATGCTCGACCACCCCTTCTTGCCCACGCTCTACGCTTCAATCAACGCGCCCAAGTGCCTCTGCTTCCTCACGCCCTTTTGCCCCGGCGGTGACCTTCACGTCCTCCGCCAGCGCTTCCCCAACAAACGCTTCCTCGAGCCCGCCGTCAGATTCTACGCATCAGAAGTGTTGTTAGCACTGGAATACCTGCACATGTTGGGGATAATCTACCGCGACCTGAAGCCGGAAAACGTGTTAATCAGATCCGACGGGCACATCATGCTGACGGACTTCGACCTGTCTTTAAAATGCGACGATTCGACATCAAGGGCCCAGATCATCTCGGAGGAAGCCCCGTCACCGAGCGTGGCACGTGGGAACGAGTGGCACGTGGAGGCAAACCGCGGGAGTTCGTCGTCGTGCATAATCCCAAGCTGCATAGTCCCGACGGCGTCGTGCTTCCAGCCAAAACGCAAGCGCAAGAAGAAGCAAAGGCTGCGTAGTGGGCCTGCCTTCGTGGCGGAGCCGATGAACGTGCGGTCGATGTCGTTCGTGGGGACCCACGAGTACCTGGCGCCGGAGATCGTGTCCGGGGAGGGCCACGGCAGCGGCGTGGACTGGTGGACGCTGGGGATATTCATGTTCGAACTGTTCTACGGCGTGACACCCTTCAAGGGCATGGACCACGAGCTGACCCTGGCCAACGTGGTGGCTCGAGCCCTGGAGTTTCCGAAGGAACCCGCCGCTTCGGCCTCCATGAAGGACCTCATATCGCAGTTGCTCGTTAAGGACCCCTCCAAGAGACTCGGCTCCCTCATGGGGGCTTCTGCCATCAAACAACACTCCTTTTTTAATGGCGTCAATTGGGCGTTGCTCAGGTGTGCAACTCCACCCTTTGTTCCACCCCCTCTTTCCAAAGATCTCTATCATCATGACCATCAAACTTGTCAAGACATTTTCATCGATTATTATTGA 1338 0.5598 MDTEDLTDDLHSLSFASTADIKRSTSFSSSATTVTPSTSSHFLPSANPHAPSSDPCRAFANRIRPLSLSHLRFTRRLGSGDMSAVYLALPRDEEAPSAALFAAKVMEKEDLARRNKEGRATTEREILQMLDHPFLPTLYASINAPKCLCFLTPFCPGGDLHVLRQRFPNKRFLEPAVRFYASEVLLALEYLHMLGIIYRDLKPENVLIRSDGHIMLTDFDLSLKCDDSTSRAQIISEEAPSPSVARGNEWHVEANRGSSSSCIIPSCIVPTASCFQPKRKRKKKQRLRSGPAFVAEPMNVRSMSFVGTHEYLAPEIVSGEGHGSGVDWWTLGIFMFELFYGVTPFKGMDHELTLANVVARALEFPKEPAASASMKDLISQLLVKDPSKRLGSLMGASAIKQHSFFNGVNWALLRCATPPFVPPPLSKDLYHHDHQTCQDIFIDYY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00895 445 PANTHER FLIPPASE KINASE 1-RELATED 3 445 - -
Cca04g00895 445 PANTHER OS11G0150700 PROTEIN 3 445 - -
Cca04g00895 445 Pfam Protein kinase domain 74 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00895 445 Pfam Protein kinase domain 302 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00895 445 Gene3D Phosphorylase Kinase; domain 1 71 158 - -
Cca04g00895 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cca04g00895 445 Gene3D Transferase(Phosphotransferase) domain 1 301 423 - -
Cca04g00895 445 Gene3D Transferase(Phosphotransferase) domain 1 159 248 - -
Cca04g00895 445 ProSitePatterns Protein kinases ATP-binding region signature. 77 104 IPR017441 GO:0005524
Cca04g00895 445 SUPERFAMILY Protein kinase-like (PK-like) 45 432 IPR011009 -
Cca04g00895 445 MobiDBLite consensus disorder prediction 29 47 - -
Cca04g00895 445 SMART serkin_6 71 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00895 445 ProSiteProfiles Protein kinase domain profile. 71 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00895 445 MobiDBLite consensus disorder prediction 29 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00895 Cca-Chr4 9437820 9441000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00895 4 445 AGC Kinase Gene Family AT3G44610 61.050 2.12e-177 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca04g00895 Pkinase 9.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00895 K08286 - gmx:100811470 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00895 04 9437820 9441000 Cca04g00895 04 9437820 9441000 ECH