Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00894 ATGAAGGTAATGAATTTACGATTTTGCCACTCTTACCAACTCTTGTCCCCAAACTTTCCCTTCCTTCTTCCTCCTTCGTCGCAGACTCCAAACTTAACTCTCAGAAAGAGAAACCCTTTTGCCATTTCCTTCGAAACCCGTTTCTGTGCTCCAATTCGCGCCTCCATGGCCTCAGCCTCCGTTACGGACGCCACTACGAAGCCGTTTTCCGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCCGCCGAAGGAGTCTTCACTGACTTGGTCGCCAAAAGGGGCCTCAATTCAAGCTTCAGAATCGACTCTGCTGGCACCATCAATTACCACGAGGGGAATCAAGCGGACCCGAGAATGAGGGCAGCTTCAAAGAGGCGTGGGATTCAGATGACGTCTATTTCGAGGCCAATCAGGCCCTCTGATTTTGTTGACTTTGATCTCATTCTTGCCATGGACAAGCAGAACAGAGAGGACATATTGGAGGCCTTCAATGGATGGAAAGATAAACATTCTTTACCGGGTGATGCACATAAAAAGGTTAAGTTGATGTGCTCGTATTGTAAAAAGCATGAGGAAAGTGAAGTCCCGGATCCTTATTATGGTGGTCCGCAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTGCTGGAAACCATTTTGGCAGAAAACAAACACGTACAAGAATCCTAA 714 0.4776 MKVMNLRFCHSYQLLSPNFPFLLPPSSQTPNLTLRKRNPFAISFETRFCAPIRASMASASVTDATTKPFSVLFVCLGNICRSPAAEGVFTDLVAKRGLNSSFRIDSAGTINYHEGNQADPRMRAASKRRGIQMTSISRPIRPSDFVDFDLILAMDKQNREDILEAFNGWKDKHSLPGDAHKKVKLMCSYCKKHEESEVPDPYYGGPQGFEKVLDLLEDACGSLLETILAENKHVQES 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00894 237 CDD LMWPTP 70 225 - -
Cca04g00894 237 Gene3D - 65 236 - -
Cca04g00894 237 SMART LMWPc_2 69 226 IPR023485 -
Cca04g00894 237 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 6 232 - -
Cca04g00894 237 PRINTS LMW phosphotyrosine protein phosphatase signature 71 88 IPR017867 GO:0004725|GO:0006470
Cca04g00894 237 PRINTS LMW phosphotyrosine protein phosphatase signature 114 130 IPR017867 GO:0004725|GO:0006470
Cca04g00894 237 PRINTS LMW phosphotyrosine protein phosphatase signature 198 213 IPR017867 GO:0004725|GO:0006470
Cca04g00894 237 Pfam Low molecular weight phosphotyrosine protein phosphatase 71 224 IPR023485 -
Cca04g00894 237 SUPERFAMILY Phosphotyrosine protein phosphatases I 67 227 IPR036196 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00894 6 231 Protein tyrosine phosphatase (PTP) family AT3G44620 56.800 1.31e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00894 K25307 - gmx:100797254 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00894 04 9431111 9433908 Cca04g00894 04 9431111 9433908 ECH