Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00890 ATGGCGACAGAGAGAACAGTAACTTCAAACCCTAGCAATGGAGAACGACCAAAGGTAGTGGTCATAACGGGCCCCACCGCTTCCGGGAAGTCGAAGCTTGCCGTTGATTTGGCCTCTCACTTCCCTCTCGAAGTCATCAACGCCGATTCCATGCAGGTCTACCGTGGCCTCGATGTTCTCACCAACAAACTCCCTCTCTCTCACCAAAACGGAGTGCCGCATCATCTCTTGGGCACTGTAAGCCCCAATGTGGAATTCACAGCTAAGGCGTTTCGCGATTCCGCGATTCCCATCATTGATGATATATTGGCTCGTAACCACTTGCCTGTTATAGTTGGGGGCACAAATTACTATATCCAGGCTCTTGTGAGTCAGTTTCTTCTAGATGATTCTGCAGAAGATATGGATGAAAGCTGTTTGGGTGATCCACCTAGTATTTATGACCTGCTTGAAGATGATAACAATTTCATTGGTGAAATTGATGGTTCAAACAATAGTTATGGCCTGCTTAAAGATATTGATCCGGTTGCAGCAAATAGAATCCATCCAAATAACCACAGAAAGATAAATCAATATATTAGTTTGTACACTCGCACTGGTGTTCTTCCTAGCAAAATTTTTCAAGGAAAGGCAGCAGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCTTGTCTACCTGTACTGGACAAATATGTAGAGCAGAGAGTAGATTGCATGATGGACGATGGATTACTCAATGAGGTCTACGACATTTATAATTTGAATGCAGATTATAGTAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTCAGCTTCTTCTTAGAATTTGTGCTGTCAAAGACATCTGTGAAAAAGAGAGGGAATTGATTGAAGGATCAGTCTTAGAAAAGGGTGAGAAATTGTGTAATGGTAATTTGATGGAGGTGGTGAGATCTTCCTCTAATACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGCTTAATACCCGGAGACTTGTTCGCCGTCAGAAGAGGATGGTCAGTAGACTGCAAACATTGTTTGGTTGGAACATACATTATGTTGATTCCACGGAATCAATATCAAGCAAGTCAGAAGATGTTTGGACTGGCCAAGTGGTTGAATCTGCTGTGAAGATAGTTAAATCTTTCCTGAGTGACAACGGAAGCTCGCCATCCACCTTTGGGACATCAAATGATACTGGGATGAAAATAACCCAAAGGGACCTCTGGACTCAATACACATGCAAGGCATGCGGAGATCGGGTGCTTAGAGGATTACATGAATGGGAACAACACAAACGAGGTCGTGGGCACCGAAAACGTATTTCTAGTCTCAAGAGCAAGGCACGTAATACTACTGGTTTCGTGAAAGAGAAGATGGAGTATTCCGAGTGTGAACACTGA 1446 0.4295 MATERTVTSNPSNGERPKVVVITGPTASGKSKLAVDLASHFPLEVINADSMQVYRGLDVLTNKLPLSHQNGVPHHLLGTVSPNVEFTAKAFRDSAIPIIDDILARNHLPVIVGGTNYYIQALVSQFLLDDSAEDMDESCLGDPPSIYDLLEDDNNFIGEIDGSNNSYGLLKDIDPVAANRIHPNNHRKINQYISLYTRTGVLPSKIFQGKAAEKWGQVDNLRYDCCFICVDACLPVLDKYVEQRVDCMMDDGLLNEVYDIYNLNADYSRGLRQAIGVREFQLLLRICAVKDICEKERELIEGSVLEKGEKLCNGNLMEVVRSSSNTESTILLEEAIEKVKLNTRRLVRRQKRMVSRLQTLFGWNIHYVDSTESISSKSEDVWTGQVVESAVKIVKSFLSDNGSSPSTFGTSNDTGMKITQRDLWTQYTCKACGDRVLRGLHEWEQHKRGRGHRKRISSLKSKARNTTGFVKEKMEYSECEH 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00890 481 Pfam IPP transferase 52 352 - -
Cca04g00890 481 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 400 - -
Cca04g00890 481 TIGRFAM miaA: tRNA dimethylallyltransferase 19 285 IPR018022 GO:0008033
Cca04g00890 481 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 400 IPR039657 -
Cca04g00890 481 Gene3D - 152 210 - -
Cca04g00890 481 Hamap tRNA dimethylallyltransferase [miaA]. 19 379 IPR018022 GO:0008033
Cca04g00890 481 Gene3D Classic Zinc Finger 423 467 - -
Cca04g00890 481 Gene3D - 17 422 IPR027417 -
Cca04g00890 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 263 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00890 Cca-Chr4 9403560 9407589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00890 10 461 C2H2 Transcription Factor Family AT2G27760 56.803 7.43e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00890 K00791 - gmx:100792690 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00890 04 9403560 9407589 Cca04g00890 04 9403560 9407589 ECH