Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00889 ATGGAGTTTGAGAATAATAATGGATCTCAAAGTCCATCATCACCAAACCCTAGATGTTCATCTCACAAGAGGAAAGCTGGGAGAAAAAAGTTCAGGGAAACACGACACCCGGTGTATAGGGGTGTACGGCAAAGAAACGGGAACAAATGGGTGTGTGAAATAAGAGAACCTAAAAACAAATCAAGGATTTGGGTAGGGACTTACCTTACTCCTGAAATGGCTGCTAGGGCACATGACGTGGCTGTCTTAGCACTTAGTGGCACCTCAGCCAAGTTCAATTTTCCTGAATCAGTTTCCCTTCTTCCACTTCCAAACTCATCTTCTGCTATTGACATAAGAGCTGCAGCAGCAAAAGCTACTTCTGCTGACCTCACATTTTCTTCCTCTCACAATGGGAATAATGCTCATCAATGTCCTTGTTTCAACTTCAGCATGCTCGGATTGGAGGGTATTCCTGATAGCAATAGCAATGATGAGTCCCAAACAATGTTTTTTGATGAGGAGGCACTCTACAATATGCCAGCTTTGTTGGATAGCATGGCAGAGGGTTTGCTTCTCACCCCGCCATCTATCAAAACACCAATGGATTGGGATGATCTTGCTTCTCAAATAGACCTCACTTTGTGGACTAACTAA 636 0.4355 MEFENNNGSQSPSSPNPRCSSHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEIREPKNKSRIWVGTYLTPEMAARAHDVAVLALSGTSAKFNFPESVSLLPLPNSSSAIDIRAAAAKATSADLTFSSSHNGNNAHQCPCFNFSMLGLEGIPDSNSNDESQTMFFDEEALYNMPALLDSMAEGLLLTPPSIKTPMDWDDLASQIDLTLWTN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00889 211 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677
Cca04g00889 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 211 IPR045277 GO:0003700
Cca04g00889 211 MobiDBLite consensus disorder prediction 1 20 - -
Cca04g00889 211 MobiDBLite consensus disorder prediction 1 36 - -
Cca04g00889 211 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Cca04g00889 211 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Cca04g00889 211 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Cca04g00889 211 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 10 211 - -
Cca04g00889 211 MobiDBLite consensus disorder prediction 21 36 - -
Cca04g00889 211 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Cca04g00889 211 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Cca04g00889 211 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Cca04g00889 211 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00889 Cca-Chr4 9379796 9380625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00889 2 210 AP2-EREBP Transcription Factor Family AT4G25470 46.226 4.00e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca04g00889 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00889 - - gmx:100793751 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00889 04 9379796 9380625 Cca04g00889 04 9379796 9380625 ECH
Cca10g00601 10 6565354 6565938 Cca04g00889 04 9379796 9380625 PCT