Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00877 ATGGCCAACTCCAAAAATCACCGTAACGGCCAGGGCGAGCCTCACCGACGAGGGAAGTTAACAAAGAAATCGTCGTCGTTTTACGGTCACTCATCAACGCCGCCGCCTATCGTTTCCGAGGCACAAATCCGCCGACCGAAGACGCCACCGAAGTTGTTGCTGAAAGTGACGACTATGGGAAGCCTGGGACCGGTGCAGGTGGTGATGACGCCGGAATCAACCGTCGGAGATTTAGTTGCGGTGGCGGTGCGGCAATACGTGAAGGAAGGTCGCCGTCCGATTTTGCCGTCGAACGATCCTTCGCAGTTCGACCTTCATTATTCTCAGTTCAGCTTAGAGAGTTTGGATAGGGAGGAGAAGCTGAAGGATATTGGATCTAGAAACTTCTTTCTGTGTCCGAGGAAGTGCGACGGGGAAGACGGAGGCGCAACGACGCCGTTTGCTTCGTGTTCCAGGGAGGCTGAGAGAGCGAGCAAGGGTGGCGCGTTTGGGTGGTTAAGTTCCTCCCAAATGGATGCTCCAATGCAGTTTTGGGGTGTTGAGGTTAAGGTGGGACAGACTGTTAAGATAGACCCAATGGATCCAGAGAGTTCATACATTCACATTTCTCAGGTTGCACTTGGTGAGGCGAAGAAGGACAAAGCAAGTGAACCTGTGGTTCTGTTTGTGAAAGTTGGTGCCCAGAAGATTGTTTTGGGAACCCTTAATAGGAATGACATTCCTCACCTATCGTTGGATTTGGTTTTGGACTCTGACTTTGAACTTTCCCACAATTCAAAAAGTGCTAGTGTCCATTTCTGTGGATACAAAGTTCTAACTGATTCGGACAATGTTTCCGACTTTTCTGATAGTGATGATGATCTTCCAGTGGAGGGCTTAGAAAATGGAATATTTGCAATTAAACCTGAAGGTGCAAAAGTTACCAAACCTTCTAAACCTGTTCCCTTGACTGGTGCATCAGCAAAACAAGTTAAGACAGTTGATCCCAAGAAAGTtgaggaggatgactctgatgatgacgatgattctgatgatgaggaagctaatgaagatgaACTCAACAGTTCTGATGAGatggatgatgatagtgatagtgatgaggaaagtgagagtgatgaagctgatgaggaAACCCCTGAAAAGAAGACTTCACCAGCTCTTATATGTGACTATGTTTTAAATGTGAATCAGGGCAAGAAGAGAGCCAAGGAGTCTGCATCAAAAACCCCAGTTTCTGCTAAAAAAGCTAAGAATGCCACCCCTGAAAAGACTGATGGTAAGAAAAGTGTACATGTAGCAACTCCTTATCCTTCGAAGAAAGGAGGGAAGTCTCCCAACATAATGCGAAAGGCAAGAATCCCAACTCTGCAGGTGGAAAGAAGCCCCAATTCCGGAAGTAGTAAAAAGTCACTTACCAACGAAATTGGTCTTGTCTTGCGACAACATAAGAAGGTTGAGCATGGTGGTCAGTGA 1473 0.4338 MANSKNHRNGQGEPHRRGKLTKKSSSFYGHSSTPPPIVSEAQIRRPKTPPKLLLKVTTMGSLGPVQVVMTPESTVGDLVAVAVRQYVKEGRRPILPSNDPSQFDLHYSQFSLESLDREEKLKDIGSRNFFLCPRKCDGEDGGATTPFASCSREAERASKGGAFGWLSSSQMDAPMQFWGVEVKVGQTVKIDPMDPESSYIHISQVALGEAKKDKASEPVVLFVKVGAQKIVLGTLNRNDIPHLSLDLVLDSDFELSHNSKSASVHFCGYKVLTDSDNVSDFSDSDDDLPVEGLENGIFAIKPEGAKVTKPSKPVPLTGASAKQVKTVDPKKVEEDDSDDDDDSDDEEANEDELNSSDEMDDDSDSDEESESDEADEETPEKKTSPALICDYVLNVNQGKKRAKESASKTPVSAKKAKNATPEKTDGKKSVHVATPYPSKKGGKSPNIMRKARIPTLQVERSPNSGSSKKSLTNEIGLVLRQHKKVEHGGQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00877 490 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 175 466 - -
Cca04g00877 490 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 175 466 - -
Cca04g00877 490 MobiDBLite consensus disorder prediction 333 375 - -
Cca04g00877 490 MobiDBLite consensus disorder prediction 457 474 - -
Cca04g00877 490 MobiDBLite consensus disorder prediction 24 38 - -
Cca04g00877 490 MobiDBLite consensus disorder prediction 304 490 - -
Cca04g00877 490 Pfam Nucleoplasmin-like domain 177 270 IPR041232 -
Cca04g00877 490 Gene3D Nucleoplasmin core domain 171 276 - -
Cca04g00877 490 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00877 Cca-Chr4 9217039 9224321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00877 175 487 C2H2 Transcription Factor Family AT5G03740 36.223 6.63e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00877 - - gmx:100802220 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00877 04 9217039 9224321 Cca04g00877 04 9217039 9224321 ECH
Cca10g00589 10 6424948 6426941 Cca04g00877 04 9217039 9224321 PCT