Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00874 ATGGATCAACATAACCATACAGACACCGACCAGTTTTTGACTCTGGGCTCCACCTCGACCGAGCCTGAGCCGCACACTCCGAAGGAAGTGCTGCTGCATTCCGGCACCGACAACGACAGCAACGTTGTTAGTGCCATTAACGTTGCTTCTGCTTCGGAGCTTGCTGTGACCGTAGCAAGCGCCGATGCTGTAGGTTCGGAACAGCCGGGGGTGAAGAGAGGGAGGGGGAGGCCTCGGAAGAACGACGTTGTTGGGAGCGCGGTGTCTCCGGCGACGGCGCCGCCGGGGTATTCCGATAGCACCGCCAGGAGAGGCAGGGGACGCCCTCGTGGTTCTGGGAAACTGCAGATTCTAGCCTCCATTGGTGGGTATATTGCAGAAACAGCTGGAGGAAGCTTCATACCTCACGTGCTGACTGTGAACCATGGGGAGGATATGGTTGGCAAGATAATGTCATTTTTTGACAAAGGCCATAGAGCAGTTTGCATACTTTCTGCTACTGGTGCTGTTTCAACTGTAGCCATTCGCAAACCTACTGATTCTGGTCATGGTATTTGGAGATATGAGGGCTACTTTGAGATATTATCTTTATCTGGATCAAGCATCTATGCTTGTACCTCTACTGGTCCAATTCGTAAAACTGGCACGTTGAGCATTTCATTGGCTAAACCTGATGGGAGTATTTTTGGAGGTGTCGTTGAGAGCACATTGATAGCAGCTTGCCCTATTCAGCTTGTTATGGGCACATTCAAGCAAAACATCAGTAACCAAATCAAGAGAAAACAGTTGTCTGAATCTTCTAGTGGGCCCATTGTGCTGGTTAATCCAGATTCAGAAAGGGATAACCTGAAAGTTCTAAAGTTGACACAAGGTGAACAGGGTTGTCCTTCACCACCAACAACAGCAACTATTGATGATAATGTCTTTCCTGCCACATCCAATGGTGTGACAGATAATGTTACTCCTTTAGATCACAATGTGCAGTCTGCCTCAGTTAATGGTGGTGATTTGGATTGCCAGAGTCCACAGCCTGTAACAGACCAAAGGACTTCTGCAGATGTGCATGCAAGTGTGACAGAGTTATAA 1086 0.4862 MDQHNHTDTDQFLTLGSTSTEPEPHTPKEVLLHSGTDNDSNVVSAINVASASELAVTVASADAVGSEQPGVKRGRGRPRKNDVVGSAVSPATAPPGYSDSTARRGRGRPRGSGKLQILASIGGYIAETAGGSFIPHVLTVNHGEDMVGKIMSFFDKGHRAVCILSATGAVSTVAIRKPTDSGHGIWRYEGYFEILSLSGSSIYACTSTGPIRKTGTLSISLAKPDGSIFGGVVESTLIAACPIQLVMGTFKQNISNQIKRKQLSESSSGPIVLVNPDSERDNLKVLKLTQGEQGCPSPPTTATIDDNVFPATSNGVTDNVTPLDHNVQSASVNGGDLDCQSPQPVTDQRTSADVHASVTEL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00874 361 ProSiteProfiles PPC domain profile profile. 130 271 IPR005175 -
Cca04g00874 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 256 - -
Cca04g00874 361 MobiDBLite consensus disorder prediction 8 24 - -
Cca04g00874 361 CDD DUF296 135 250 IPR005175 -
Cca04g00874 361 PRINTS AT-hook-like domain signature 72 82 IPR017956 GO:0003677
Cca04g00874 361 PRINTS AT-hook-like domain signature 101 112 IPR017956 GO:0003677
Cca04g00874 361 MobiDBLite consensus disorder prediction 61 113 - -
Cca04g00874 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 251 IPR005175 -
Cca04g00874 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 350 IPR039605 GO:0003680
Cca04g00874 361 Gene3D - 135 267 - -
Cca04g00874 361 MobiDBLite consensus disorder prediction 1 39 - -
Cca04g00874 361 MobiDBLite consensus disorder prediction 330 361 - -
Cca04g00874 361 PANTHER DUF296 DOMAIN PROTEIN 49 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00874 Cca-Chr4 9150334 9155721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00874 71 262 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.667 3.18e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00874 - - gsj:114378162 419.853