Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00872 ATGGAGCATGCGGAACAACAGCCGGAGCAGCCGGTTCGAAGACCGAGGGGGCGCCCgaggaagaggagaagaaaggaggaggaggagaatgagaacgaggcgaagaggcaggCTATGGGGACTCGGGCGGTGGCGTTTGTGGGAAGGTATGTGTTGAAGGAGTTTCCTAGAAATGGGGTTTTTCTAGGCAAAGTTATGTATTATGAGTGTGGATTGTATAGAGTTAGTTATGAGGATGGTGATTGTGAGGATTTGGATAGTGGTGAGGTTCGGGCGATACTTTTGAATGATGGTGATTTTGATGATGACTTGGCGCGGAGGAAGGGGGTGTTGGAGAAATTAGTGTTGAAGAAAAATGGAAAGGTGGAAAATGTTTCTGCTGAAGGGAGTAAGGAGGGATTAGCGGTTGGAGTGAGTGAATTGAGTGAAGGGTTGGTGGTTGAAAatgatgacggagatggaaatgatgacgatgacgatgatgatgatggtgatTCGTCAAGTGACTCTGGTTTGGAGGGGAGGCATTCTGGGATTGATGCCGAGGCGCTGCCGCCTTTGCCGCCACCGCTAGAGTTGCCACCATCATCTGGAACCATTGGCGTTCCTGAGCAGTGTGTCTCACTCCTATTTGCTGTGTATGCATTCTTGAGGTCATTCAGCATTCGCTTGTTTCTAATGCCGTTTACTTTGGACGAGTTTGTTGGTTCTCTTAACTGCCGAATTGCAAACTCCTTGTTTGATGCCATTCATGTTTCCCTAATGAGAGTGTTGCGGCGACATCTTGAAACTGTCTCTTCCGAGGGCTCAGAGCTTGCTTCAAAATGCCTTAGGTGCTATGACTGGAGCATGCTAGACTCGTTGACTTGGCCGGTGTACTTAATAATGTATCTGGTAGTCAATGGGTACAAAGATGGGCCCGAATGGAAAGAATTTTATGATGAAGTTTCTAACGGTGAGTATTATGTGCTTCCAGTATATAGGAAGCTACAAATACTCCAAATCTTGTGCGATGATGTTCTGGCATCCGAGGAGGTGATAGCTGAAATGAATAAGCGAAAAGAATCAGAGGTTCCAGACAATGATGGAGAAGATGTCCTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGATATGCCAATACATCAGCTTGTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAGCCTGGGAACTCTATTTCATATTTAAGAGATACAGAAAGTACTGAAGATTGTGATGTTGATAGAAATGGTGATGAATGTCGCCTCTGTGGCTTGGATGGGACTCTACTTTGTTGTGATGGATGTCCCTCTGCTTATCATTCTAGGTGTATTGGCGTGATAAAAATGCATATACCAGAAGGGCCATGGTATTGCCCAGAGTGCAAAATTAATATGACAGAGCCAACCATTGCAAAGGGAACATCACTCCGAGGAGCTGAAATATTTGGAAGGGATTTGTATGGGCAACTCTTCATGGGTACTTGCGAACACTTGCTTGTGTTGAATATTGACTGTGATGAATTCCATCTTAGATATTACAATCAGAATGACATTCCAAAGGTTCTGCAAGTGCTTTATGAATCTATGCAGCATAGACCTATATACCATGATATTTGCATGGCAGTGCTACAATATTGGAGTGTTCCAGAAAATTTCTTGTTTCATTCTGTTGCAACTGGAACAAATGTAAACTCTTCAAATATAAAGGAAGAGACAGAGCCCTCTACTTCATTACTTCCTTCTTTGGGTGAAGGCAACAATAAACCTGTTAGTTTGGTGAAGGAAGAATATCCTTTAACCACTGTAAGTACAATTTACAGTGCTGATATGGTGCCTCAGTGCTATGCCAATGATAGCAGTAATGAGTGCCCTACTTTGACTATGAAGCTTCCTGAGGACACTAGGATTGAGTCCATCATCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTCATCAGTCTGACATGAATCATCAAAATTTTGTTGATAGGCCAACGGTTGTAGATCCTGCTAAGTGCTCTATGGCAAATGGTGAATTTAGTAATTATGGCCATGCAAATGATACTGGGTTGCCCATAACTGTTTCTTTGCTAACCAAAGAAAGCACCCAATCAGGTTTTGAAAAGTGTGAACGCAATGTAATCAATGATTTTGCTTACAAGGGTCTCTCCTATAAGCCTCTGTCATACATTAATTACTATATACATGGTGATTTTGCTGCTTCAGCAGCTGCTAAATTTGCCCTTCTTCTGTCAGAGGAATCTAGGTCAGATGGCCATGTGTCCGACAGGAGAACTGCATCTGTAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACTGCATCGCGATTCTTTTGGCCAAGTTCTGAAAAAAAGCATGTGGAGGTTCCGAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTACAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTTTAAGTGGCACAAAAAGTGCTATAAAAATACTTGCTGGTTTTTCTCCTATAAGAAGTGGAGAGGGAATACTCCCTAGTATTGCTACTTACATTATATACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGGCAGTGGCGTAAGCGAGTGGAACAGGCCACAACATTTAGTGCTATCAAGCCACTTTTACTTCAACTTGAGGAGAACATTCGAACGATTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATTTCCCATGGCACAAAGTGCCACATCTACTGTTGGAACAGTACAAAAACGAGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGATGAAGCTTCAACTGATGGCTGCTCCAAAAACTGGGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTCTTGCCAAAATCCATGGTCAGAAAAGCAGCACGACAAGGTGGTTCGAGAAAAATTTCAGGCATTTCCTATGCTGATGGCTTCGAAATCCCTAAAAGAAGTAGACAACTCGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTTAGATATCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCAGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACCGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAGTAAAGTTGTAGAGGGGAGAAGTTGTTACGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGTGTGATGAAAAATGTTGTTGAAATAGAGCAAGGTCCAGAAGGAAAGGAAAAGTATTGGTTTCATGAAATGCGTATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGGAAACGCCCCATGTAATGAAGAGCACTTGAATACTGCATCTGAATTACTTCACAGAAGGCGATTGAAAGCTGTCTGCAAGGACATATTCTTTTACCTTACCTGCAAGAGAGATAACTTGGATGTGGTGTCGTGTTCTGTATGTCAGATGGGTGTATTAAATCGGAATGCTCACAAGTGTAATGCATGTCAAGGTTATTGTCATGAGGGCTGTTCCACGAGTTCAACATTCTCTTCAAATGAAGTTGAGACCATATGCAAGCAATGTTACCATGCCAGAATTCTTGCTCAGAAAGAGACTAATAATGAATCTCCAAACAGTCCGTTACTACTCCAAGGACGAGTGAATAACTCTGGTGCATTTTTGAAGGGATCAAGGCCTAAAAGCCACGATCGAGTACCAAAATCTTCCAGGACAAAGGCACCAAATCCTGACATGAAACAAGTTACCCCTGTGGTTGTTTTGAAAGGAACAAAGGCTAAATGTTATGAACAAGAACCGACTTCTACCAGGACAAAGGATAATCAAAACGCCCTCGCAAAATTTGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAGATACAGGCAATGATTTCAGCCGCAGAAACATACTTCTAA 4053 0.4135 MEHAEQQPEQPVRRPRGRPRKRRRKEEEENENEAKRQAMGTRAVAFVGRYVLKEFPRNGVFLGKVMYYECGLYRVSYEDGDCEDLDSGEVRAILLNDGDFDDDLARRKGVLEKLVLKKNGKVENVSAEGSKEGLAVGVSELSEGLVVENDDGDGNDDDDDDDDGDSSSDSGLEGRHSGIDAEALPPLPPPLELPPSSGTIGVPEQCVSLLFAVYAFLRSFSIRLFLMPFTLDEFVGSLNCRIANSLFDAIHVSLMRVLRRHLETVSSEGSELASKCLRCYDWSMLDSLTWPVYLIMYLVVNGYKDGPEWKEFYDEVSNGEYYVLPVYRKLQILQILCDDVLASEEVIAEMNKRKESEVPDNDGEDVLPSEVGLRRVQPRYANTSACEDKEATKFVSASNAVNQPGNSISYLRDTESTEDCDVDRNGDECRLCGLDGTLLCCDGCPSAYHSRCIGVIKMHIPEGPWYCPECKINMTEPTIAKGTSLRGAEIFGRDLYGQLFMGTCEHLLVLNIDCDEFHLRYYNQNDIPKVLQVLYESMQHRPIYHDICMAVLQYWSVPENFLFHSVATGTNVNSSNIKEETEPSTSLLPSLGEGNNKPVSLVKEEYPLTTVSTIYSADMVPQCYANDSSNECPTLTMKLPEDTRIESIISADSASVSVSHQSDMNHQNFVDRPTVVDPAKCSMANGEFSNYGHANDTGLPITVSLLTKESTQSGFEKCERNVINDFAYKGLSYKPLSYINYYIHGDFAASAAAKFALLLSEESRSDGHVSDRRTASVNTYLQAKAFSLTASRFFWPSSEKKHVEVPRERCGWCFSCKAPVTSKRGCMLNHAALSGTKSAIKILAGFSPIRSGEGILPSIATYIIYMEECLRGLVVGPFLSASYRRQWRKRVEQATTFSAIKPLLLQLEENIRTIAFCGDWVKLMDDWLVEFPMAQSATSTVGTVQKRAPSGRRYKKRSAIDEASTDGCSKNWVWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKISGISYADGFEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDSKVVEGRSCYGIAFGSQKHLPSRVMKNVVEIEQGPEGKEKYWFHEMRIPLYLVKEYEEGNGNAPCNEEHLNTASELLHRRRLKAVCKDIFFYLTCKRDNLDVVSCSVCQMGVLNRNAHKCNACQGYCHEGCSTSSTFSSNEVETICKQCYHARILAQKETNNESPNSPLLLQGRVNNSGAFLKGSRPKSHDRVPKSSRTKAPNPDMKQVTPVVVLKGTKAKCYEQEPTSTRTKDNQNALAKFVLGVLYGKRKIMKIQAMISAAETYF 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00872 1350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 480 IPR013083 -
Cca04g00872 1350 Pfam PHD-finger 429 471 IPR019787 -
Cca04g00872 1350 ProSitePatterns Zinc finger PHD-type signature. 429 470 IPR019786 -
Cca04g00872 1350 MobiDBLite consensus disorder prediction 1 38 - -
Cca04g00872 1350 SMART PHD_3 428 471 IPR001965 -
Cca04g00872 1350 SMART PHD_3 1187 1233 IPR001965 -
Cca04g00872 1350 ProSiteProfiles DDT domain profile. 204 264 IPR018501 -
Cca04g00872 1350 MobiDBLite consensus disorder prediction 146 196 - -
Cca04g00872 1350 CDD PHD2_CHD_II 429 470 - -
Cca04g00872 1350 SMART testlast3 204 264 IPR018501 -
Cca04g00872 1350 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 13 1304 - -
Cca04g00872 1350 SUPERFAMILY FYVE/PHD zinc finger 399 472 IPR011011 -
Cca04g00872 1350 MobiDBLite consensus disorder prediction 146 167 - -
Cca04g00872 1350 Pfam DDT domain 205 261 IPR018501 -
Cca04g00872 1350 ProSiteProfiles Zinc finger PHD-type profile. 426 473 IPR019787 -
Cca04g00872 1350 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 308 351 IPR028942 -
Cca04g00872 1350 Coils Coil 18 38 - -
Cca04g00872 1350 MobiDBLite consensus disorder prediction 1264 1288 - -
Cca04g00872 1350 MobiDBLite consensus disorder prediction 22 36 - -
Cca04g00872 1350 PANTHER PHD FINGER FAMILY PROTEIN 13 1304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00872 Cca-Chr4 9097196 9103762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00872 294 630 EF-hand Containing Proteins AT5G22760 42.192 1.42e-73 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca04g00872 DDT 7.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00872 - - gmx:100808261 1860.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00872 04 9097196 9103762 Cca04g00872 04 9097196 9103762 ECH
Cca10g00582 10 6336122 6344521 Cca04g00872 04 9097196 9103762 PCT