Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00869 ATGTCAAAATTAGCCAACACAAACGGGAGACTCCAATTGTTGATAATAATTTTACCTGATGTAAAGGGGTCTTATGGAAAAATAAAGCGTATTTGTGAAACTGAACTAGGAATAGTATCTCAGTGTTGTCAGCCAAGACAAATTGTAAAGTCGTCGAACAAACAATATCTTGAAAATGTGGCCCTCAAGATAAATGTTAAGGTTGGTGGTAGTAACACAGTGCTGAATGATGCAATTGCAAAGCAAATCCCTCACGTGTCTGATAAAGCAACATTGATCTTGGGTGCGGATGTAACACATCCACAGCCAGGGGAAGACTCTAGCCCTTCTATTGCTGCAGTTGTGGGATGCATGGATTGGCCTTTTGTTACCAAGTACAGAGGAGTTGTTTCTGCCCAGCCACATCGGGAGGAAATCATTCAAGATCTTTTTAAATCATATCATGATCCGAATAGGGGAGCTGTGTATTCAGGAATAATCAGGGATTTACTTATGGCATTTCGACGTTCAACTAACATGAAGCCAGACAGGATTATATTCTACAGAGATGGCGTAAGCGAGGGCCAATTTAGTCAGGTTTTGCTTCATGAGATGGATGCTATTAGAAAGGCTTGTGGTTCACTTCAGGCGGAGTATTTCCCTCCTGTTACTTTTGTGGTTGTCCAGAAAAGACACCACACACGCTTGTTTCCTTTTGAACACGAACGTCGTGATCAGACAGACAGAAGTGGAAATATAATGCCAGGGACGGTTGTTGACACATCCATTTGCCACCCTCGGGAGTTTGATTTTTACCTCAATAGTCATGCTGGAATTCAAGGAACTAGTCGTCCGACTCATTATCACGTGTTGTATGATGAAAATAATTTCACCGCAGATGAGTTGCAGAATTTTACAAATAGTTTATGTTATACCTACGCAAGATGCACCCGATCAGTTTCAATAGTTCCTCCCGCGTACTACGCGCACTTGGCTGCATTTCGTGCACGTTACTATATAGAAGGCCAATTATCCGACGCCGATTCATCAACTGAAACTGGAGGTAGAAGAGCAAACTTTCAGGTTGTATTGCCATCTCAACtcaacatttatttatgggaataa 1104 0.4121 MSKLANTNGRLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPRQIVKSSNKQYLENVALKINVKVGGSNTVLNDAIAKQIPHVSDKATLILGADVTHPQPGEDSSPSIAAVVGCMDWPFVTKYRGVVSAQPHREEIIQDLFKSYHDPNRGAVYSGIIRDLLMAFRRSTNMKPDRIIFYRDGVSEGQFSQVLLHEMDAIRKACGSLQAEYFPPVTFVVVQKRHHTRLFPFEHERRDQTDRSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQNFTNSLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGQLSDADSSTETGGRRANFQVVLPSQLNIYLWE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00869 367 ProSiteProfiles Piwi domain profile. 13 334 IPR003165 GO:0003676
Cca04g00869 367 Gene3D - 1 77 - -
Cca04g00869 367 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 345 - -
Cca04g00869 367 SMART Piwi_a_2 13 334 IPR003165 GO:0003676
Cca04g00869 367 Gene3D - 82 361 IPR036397 GO:0003676
Cca04g00869 367 CDD Piwi_ago-like 6 333 IPR045246 -
Cca04g00869 367 PANTHER ARGONAUTE1 6 345 - -
Cca04g00869 367 SUPERFAMILY Ribonuclease H-like 8 334 IPR012337 -
Cca04g00869 367 Pfam Piwi domain 14 333 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00869 Cca-Chr4 9078612 9081652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00869 2 342 Eukaryotic Initiation Factors Gene Family AT1G48410 72.222 4.71e-174 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00869 K11593 - ccaj:109798249 731.095