Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00864 ATGGAGAAGATAAGTGATGAATACAGTTCAGAAGAGGAATGCATGGCGGATTATAGGCGCGGAGGGTACCATACAGTTGAAATCGGAGACACATTCAACAATGGCCGCTACGTCGTGCACTCCAAACTCGGTTGGGGCCATTTCTCCACCGTCTGGCTCGCTTCCGACACTCTCAATTCGCGTTATGTAGCCCTTAAAATTCAGAAGAGTGCGCAGCACTACACTGAAGCTGCAATGGATGAAATCAAGATTCTCAAACAAATAGCTGAGGGGGACTTGAATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCAGGGCCTAATGGCCAGCATGTGTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATCAAATTTAGTGACTTTCACGGCCTTCCTCTCTCCATGGTTAAAGAAATCTGTTTTCATATTTTGGTGGGCTTGGATTACTTGCATCGTGAGCTTTCTATCATACACACTGATTTGAAGCCGGAGAATGTGTTGCTTCTGTCACTGATAGATCCATCTAAAGATCCTAGGAAATCAGGTGCTCCAATCATCCTTCCAAACACTGAGGATATGGCTGTGTCTAATAATGAGACTAACCAAGACAATAAAATTTTGAATGGAGATCCGACAAAGAACCAGAAAAAGAAAATGCAGAGAAATGCCAAGGTAGCTCAAGGCTGTGTTGAGATGGGAAGTTCAGAGGAAGCTGTGGATTATAAAGGACCTGGGCAAGAAGATTGTGGCAATACTGTGAAATCAATTGTGGAATTTTTTGAAGATAAACCTAATGGTTCTCTGATTAAAGATGAATCAACAGAGAATTTTGAAAAAGATGATTCACAAGGAAGTCAAGGTCATAGGAGAGGTAGCCGTTCCATGAGAAAGAAGTTGCTGGGAGCTGTTGATCGTAAGTGCAAGCTGGTTGATTTTGGTAGTGCTTGTTGGACTTATAAACAATTCACAAATGATATACAGACAAGGCAATACAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCTACCCCCGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGTCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGGATCACCTGGCATTGATGATGGAGCTTCTTGGGGTGATGCCTAGCAAGATTGCACTAGGTGGCCGCTATTCCCGAGAATTTTTCAATAGCCAAGGGGACTTGAGGCACATCAGCAAGTTGCGATTCTGGCCAATGGATAAGGTGCTGATGGAGAAGTATAATTTCAGTGAGCAAGACACAAATGACCTGGTTGACTTCCTTGTTCCATTACTTGATTTTGACCCAGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCGATGGATCAGTGCAGGTCCTCAGACTCGTGTGCCCTCCATAACTACTGTGCAACCGGATGCCATCAATGAGGAATTGTCTGAAAGGAGGAAGAGGGAAAAGGCAGAGAAGGAGGCAGTGGAAATTGATTTGATGAATATAGCCATTAAAGGAACTCCAAAGCCTCTCAAAGACCCCCAACCTCTAAAGTCAAACAAATAG 1617 0.4317 MEKISDEYSSEEECMADYRRGGYHTVEIGDTFNNGRYVVHSKLGWGHFSTVWLASDTLNSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLNDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKFSDFHGLPLSMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSLIDPSKDPRKSGAPIILPNTEDMAVSNNETNQDNKILNGDPTKNQKKKMQRNAKVAQGCVEMGSSEEAVDYKGPGQEDCGNTVKSIVEFFEDKPNGSLIKDESTENFEKDDSQGSQGHRRGSRSMRKKLLGAVDRKCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGVMPSKIALGGRYSREFFNSQGDLRHISKLRFWPMDKVLMEKYNFSEQDTNDLVDFLVPLLDFDPEKRPTAAQCLSHRWISAGPQTRVPSITTVQPDAINEELSERRKREKAEKEAVEIDLMNIAIKGTPKPLKDPQPLKSNK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00864 538 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 6 535 - -
Cca04g00864 538 MobiDBLite consensus disorder prediction 208 227 - -
Cca04g00864 538 Coils Coil 495 515 - -
Cca04g00864 538 Gene3D Phosphorylase Kinase; domain 1 13 120 - -
Cca04g00864 538 MobiDBLite consensus disorder prediction 274 295 - -
Cca04g00864 538 SMART serkin_6 37 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00864 538 MobiDBLite consensus disorder prediction 274 303 - -
Cca04g00864 538 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Cca04g00864 538 SUPERFAMILY Protein kinase-like (PK-like) 31 487 IPR011009 -
Cca04g00864 538 ProSiteProfiles Protein kinase domain profile. 37 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00864 538 CDD STKc_SRPK 26 475 - -
Cca04g00864 538 Pfam Protein kinase domain 37 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00864 538 Pfam Protein kinase domain 312 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00864 538 Gene3D Transferase(Phosphotransferase) domain 1 121 476 - -
Cca04g00864 538 PANTHER SERINE KINASE-LIKE PROTEIN 6 535 - -
Cca04g00864 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00864 Cca-Chr4 9036890 9041272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00864 5 526 EF-hand Containing Proteins AT5G22840 64.595 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Cca04g00864 Pkinase 2.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00864 K08832 - gmx:100790060 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00864 04 9036890 9041272 Cca04g00864 04 9036890 9041272 ECH
Cca10g00575 10 6274100 6278937 Cca04g00864 04 9036890 9041272 PCT