Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00861 ATGTCTCGTCGCAGCGGTGCCTCTAAGCAATCTCAACCGTCTCCGGTGCCGTCGCATGCCGGGAGAGGACGCGGCCGCGGACAAAATCCTAccgtcgccgccgccgccgccgctcctcctcctcctccatcaccgaatgcgccagcggtaaccgcgcctcctccgcctcgctccgccgcggcACCTTCTCCGGTGAATGCTCCACCGTCGACGGCTCCTGCTACTGCCGCGTCATCGTCCACGGCGGTGGAGTCGCTGAGTTCCGTGGTGGAGAAGCAGCTGACTCTGGCGGCGCCGTCGTCGGCGAGGGCTTACCGGATCCCTGACCGGCCGGGCTACGGCAAAGCGGGACGGAGAATTCAAGTTCGTGCGAATCACTTTCAAGTTCAAGTCGCTGAGCGGGATCTTTATCATTATGATGTATCCTTCAAACCTGAGATCATCTCCAAGTACGTGTGCAGGAAGGTTATTAGTTTACTGATTCAAATGCACCGGGAGTCTATGTTGGGAAATAGCATACCAGCGTATGATGGGCGAAAGAGTCTATTTTCTGCAGGACCCTTTCCTTTCGAGTCCAAGGATTTTATGATCAAGTTGGAAGACGACGATGAAAGTGGCTCTTCCACTGCTCCTGCTAAGACAAAGCGCGTCCGTGAGTACAAAGTTACAATCCGGTTTGCCTCCAAGACCGACGTTCATCACCTTAACCAGTTTCTCAAGAGACGTCAGCTCGACTGTCCATATGAAACTATTCAAGCTCTGGACGTTGTTCTGCGGGCAACTCCAACCGAAATGTACAATGTGGTGGGGAGGTTGTTTTACCACCCTTCTTTGGGGCGAACTGGTACTCTAGGCAGTGGTACAGAGTACTGGAGAGGATATTACCAAAGTCTCCGCCCAACCCAAATGGGGCTGTCTCTAAATATTGATGTGTCCGCGAATGCATATTATGAGCCGATTCCTGTGATTCATTTCATTAACAAGCATTTTAATTTTGATATTAGAAGGCCTTTGTCGGATCAAGCCCGTGTTAAGATAAGGAAATCTTTGAAAGGAGTCAGGGTAGAATGTAATCATGGTCAGAATATTAGACGGTATAGAGTTGCCGGCGTCACCAAAGAATCACTCAAAGACTTAACGTTTCTTGATGGCAATGGAACAAAAAAATCTGTTGTCGAATACTTCCACGAGCAATACAATATTATGTTTCAGTATTTGAGTCTTCCTGCTCTGCAAGCTGGCAGTGACACTAAACCAATTTATTTGCCTATGGAGGTTTGTCATATTGTGGCTGGGCAGAGATACACCAAGAGATTGAATGAGGAGCAGGTATCTGCTCTTTTAAAGGCAACCTGTCAACGACCTCGTGAGAGGGAGAACAATATCAAGCAGGTTGTGAGGCAGAGCAATTTCAATGCTGACCAAATTGTGCGTCAATTTGGAATTCAAGTGAGGGGGGATCCTGCATTGATTGATGCTCGTGTTTTGACACCTCCAATGCTTTTATATCATCAAAGTGGCAAAGAATCTCGTGTTGAACCCAGGATGGGTCAGTGGAATATGATCGATAAGAAAATGATAAAAGGTGGTAATGTGCAATATTGGACTTGCCTTAACTTGTCAATGAATATCAGTGATGACATGGCCGGTAAATTTTGTGATCAACTGGCTGTGATGTGCACAACCAAGGGAATGCAATTCAATCGGACGCCTTTACTGCGTGTAACCCATGGTCAACCTAATCAGGTTGAGAATGTACTTGTGAATTTGAATAAGCAGTGTATGTCAAAATTAGCCAACACAAACGGGAGACTCCAATTGTTGATAATAATTTTACCTGATGTAAAGGGGTCTTATGGAAAAATAAAGCGTATTTGTGAAACTGAACTAGGAATAGTATCTCAGTGTTGTCAGCCAAGACAAATTGTAAAGTCGTCGAACAAACAATATCTTGAAAATGTGGCCCTCAAGATAAATGTTAAGGTTGGTGGTAGTAACACAGTGCTGAATGATGCAATTGCAAAGCAAATCCCTCACGTGTCTGATAAAGCAACATTGATCTTGGGTGCGGATGTAACACATCCACAGCCAGGGGAAGACTCTAGCCCTTCTATTGCTGCAGTTGTGGGATGCATGGATTGGCCTTTTGTTACCAAGTACAGAGGAGTTGTTTCTGCCCAGCCACATCGGGAGGAAATCATTCAAGATCTTTTTAAATCATATCATGATCCGAATAGGGGAGCTGTGTATTCAGGAATAATCAGGGATTTACTTATGGCATTTCGACGTTCAACTAACATGAAGCCAGACAGGATTATATTCTACAGAGATGGCGTAAGCGAGGGCCAATTTAGTCAGGTTTTGCTTCATGAGATGGATGCTATTAGAAAGGTATGA 2397 0.4335 MSRRSGASKQSQPSPVPSHAGRGRGRGQNPTVAAAAAAPPPPPSPNAPAVTAPPPPRSAAAPSPVNAPPSTAPATAASSSTAVESLSSVVEKQLTLAAPSSARAYRIPDRPGYGKAGRRIQVRANHFQVQVAERDLYHYDVSFKPEIISKYVCRKVISLLIQMHRESMLGNSIPAYDGRKSLFSAGPFPFESKDFMIKLEDDDESGSSTAPAKTKRVREYKVTIRFASKTDVHHLNQFLKRRQLDCPYETIQALDVVLRATPTEMYNVVGRLFYHPSLGRTGTLGSGTEYWRGYYQSLRPTQMGLSLNIDVSANAYYEPIPVIHFINKHFNFDIRRPLSDQARVKIRKSLKGVRVECNHGQNIRRYRVAGVTKESLKDLTFLDGNGTKKSVVEYFHEQYNIMFQYLSLPALQAGSDTKPIYLPMEVCHIVAGQRYTKRLNEEQVSALLKATCQRPRERENNIKQVVRQSNFNADQIVRQFGIQVRGDPALIDARVLTPPMLLYHQSGKESRVEPRMGQWNMIDKKMIKGGNVQYWTCLNLSMNISDDMAGKFCDQLAVMCTTKGMQFNRTPLLRVTHGQPNQVENVLVNLNKQCMSKLANTNGRLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPRQIVKSSNKQYLENVALKINVKVGGSNTVLNDAIAKQIPHVSDKATLILGADVTHPQPGEDSSPSIAAVVGCMDWPFVTKYRGVVSAQPHREEIIQDLFKSYHDPNRGAVYSGIIRDLLMAFRRSTNMKPDRIIFYRDGVSEGQFSQVLLHEMDAIRKV 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00861 798 MobiDBLite consensus disorder prediction 1 79 - -
Cca04g00861 798 SMART Piwi_a_2 607 797 IPR003165 GO:0003676
Cca04g00861 798 Pfam Piwi domain 608 797 IPR003165 GO:0003676
Cca04g00861 798 Pfam Mid domain of argonaute 514 592 IPR032473 -
Cca04g00861 798 CDD PAZ_argonaute_like 319 430 - -
Cca04g00861 798 Gene3D - 676 798 IPR036397 GO:0003676
Cca04g00861 798 Gene3D - 495 671 - -
Cca04g00861 798 SMART PAZ_2_a_3 329 456 IPR003100 GO:0005515
Cca04g00861 798 MobiDBLite consensus disorder prediction 35 69 - -
Cca04g00861 798 Pfam Argonaute linker 2 domain 457 503 IPR032472 -
Cca04g00861 798 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 12 797 - -
Cca04g00861 798 Gene3D paz domain 314 435 - -
Cca04g00861 798 Pfam PAZ domain 341 446 IPR003100 GO:0005515
Cca04g00861 798 ProSiteProfiles PAZ domain profile. 320 431 IPR003100 GO:0005515
Cca04g00861 798 ProSiteProfiles Piwi domain profile. 607 798 IPR003165 GO:0003676
Cca04g00861 798 SUPERFAMILY Ribonuclease H-like 602 797 IPR012337 -
Cca04g00861 798 MobiDBLite consensus disorder prediction 1 17 - -
Cca04g00861 798 PANTHER ARGONAUTE1 12 797 - -
Cca04g00861 798 SMART DUF1785_2 267 319 IPR014811 -
Cca04g00861 798 Pfam N-terminal domain of argonaute 118 258 IPR032474 -
Cca04g00861 798 Pfam Argonaute linker 1 domain 269 317 IPR014811 -
Cca04g00861 798 SUPERFAMILY PAZ domain 315 472 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00861 Cca-Chr4 9001594 9007684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00861 44 797 Eukaryotic Initiation Factors Gene Family AT1G48410 52.368 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00861 K11593 - gmx:100799033 1022.69