Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00857 atGCAGATAAGGAGGTCGTCGTATCATGATGTTGTGAGGGTAACGGAGATTCAGAAGATTTTGGATATCAGTGGAGTTCAAACGTACGTGATTAACAGTGCTAGAGTTCTTTTCCTCAATGAGAGGCCTCAGAATCAGCCTAAGACCAATAATGCTATTGTTAGTGGCAAAAGTAACTCCCATTTGTGTGAAATTTGCAGAAGGAATCTCTTGGACCCTTTTCGTTTCTGTTCTTTGGGATGCAAGCTTGTGGGAATAAAGAAGAATGGGAACGCGAGGTTTGTCTTGAGCGCAAAGAAAGACGAAGAAATAGGGAGAATGCATGAAGGAATAGCAAGGTTGGCATCAAAGGAAGAATTGCGTGAAGGAATCCACAAACAAGTGTACCAAAGCACGCCTTCTCATGTATCTCTACAAGTTTGCTCAAATTCAAGGAGAAGAAAAGGGGTACCTCATAGGGCACCTTACCTTTAG 474 0.4241 MQIRRSSYHDVVRVTEIQKILDISGVQTYVINSARVLFLNERPQNQPKTNNAIVSGKSNSHLCEICRRNLLDPFRFCSLGCKLVGIKKNGNARFVLSAKKDEEIGRMHEGIARLASKEELREGIHKQVYQSTPSHVSLQVCSNSRRRKGVPHRAPYL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00857 157 Pfam PLATZ transcription factor 4 83 IPR006734 -
Cca04g00857 157 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 156 - -
Cca04g00857 157 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00857 Cca-Chr4 8926954 8928786 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca04g00857 PLATZ 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00857 - - gmx:100787414 268.855