Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00854 ATGTTGTCCGGGGTCCGCACTGGCCTTAAGAGAGAATTCGCCTTTGCCATGAAGTACCAGTCTGAGATCTATGTTTCTACGGGTCGAACTCGCTCCAACATGACCCAAAATGCAGTTCAAGTCCCCAATCGCTCCAACAAAAAAAGGTATAAAAAATCTAATTTAGAGAAACCAAAAAGTGGAAATCTTACTGATTTGGTAAAAAACAAGGAGGAGGATGGTGATACTATGAATGAGAAAAAGGCAAAGAGTGATGCGTACAACTCCGAGGAACCCAAGAGCCAAGTGGGTGGTGAAGCTACAACGATTGTGTGTAAAGAGATGTACAAGAGTGATGAGACTAAAACTAAGGTGGTGCAAACAAAAAAGCAGCTTACTTGTGATGATGAGATCAAAGATGGAGCCGGTGGGAATGATTCAATGTTAGGTTGCAAAGCGAAACCCACAAGGAGGTTTACACAATCAACACTGAAGAACTtggatgatggtgatggtaaggtggcaagtgatggtgTTCAAAAGAAAGTTGAGAGTGATTTTGTAAAAATAACTAAGGATTTTGCAGGGAATAAGTTTCCTTCTAAGCTAAAAGACCTTTTATCCTCTAGGATTCTTGATGGACTACCTGTGAATTATGTTCGTAGCACAAAGGCAAAAGTTGTAGGTACCCGAGGAGTAATTTCTGGCAACGGGGTTGTGTGTTATTGTGAAGTTTGTAATGGGATTGAGGTTGTGACACCCACAGTTTTTGAGTTGCATGCTGGTAGTTCAAACAAGCGCCCCCCAGAGTATATTTTTCTTGAGAATGGGAATACTCTTCGTGATGTTATGAATATGTTTTTGAACATTCCATTAAGAACTTTGGAGGAAGCTCTGCAAAGGATACTTGGAGCCTTTATATTCAAGAAATCAAAATTTTGTGTGAACTGTAGAGACATGCTTCCAAAATTAGTAGATAGTGGAATGAAACAAAATGCATGTCATCGTAAGAGTCAAGGAAAACTAACGAAGAAGGATTTACGTTTGCATAAGTTGGTTTTTGAGGCGGATGTGTTGCCGGATGGAACTGAAGTATCATACTACTCTCATGGACAGAAACTTTTGGTTGGTTACAAAAAAGGATATGGAATTATTTGTAGTTGTTGTAACAACGAGCTTAGCCCTTCTCAATTTGAAGCACATGCTGGTTGGGCATCCCGACGAAAGCCCTACCTACACATATACACATCTAATGGAGTCTCACTTCATGAGTTGTCCATCACCTTATCGAAAGATCCTAGGTTTTCTACCAATGATAACGATGACCTTTGCAGAATATGTTTAGATGGAGGGGATCTTTTGTGTTGTGATAGTTGCCCAAGAGCTTTTCACAAAGAATGCGTAAATCTTCCATGTATTCCAAGTGGTGTTTGGTATTGTAAATATTGTCAGAATAAGTTCCAGAAGGACAAATATGTTGAGCGTAATGAAAATGCTAAGGCAGCTGGAAGGATTGATGGCATTGATCCTTTAGAACAAATAAATCAAAGATGCATTCGTATTGTCAAAGAGTTTGACTATGGTGGATGTGCACTCTGTAGATGTCAATATTTTACCAAAAGCTTTGGTCCTCGAACAGTAATTATTTGTGACCAGTGCGAAAAGGAATACCATATTGTGTGTTTGAAGAATCATAATATTCAAAATCTAAAGGAATTACCTAAAGGGAATTGGTTCTGTAGTTCAAATTGTAATCAAATTCATACTGATTTGGCGAGTTTGGTGGCTCGTGGTGAAGAAAATATTCCAAATTCCCTCCTGAGTGTGATTAAAAAGAAATATGATGACAAAGGATTAAAAAATGGGGATGATCTAGATATAAAATGGAGGGTTCTAAACTGGAAATTGGATGAATCTGATGAGAATGAAGAAATGCTTTCAAAAGTTGTTGATATTTTTCACGAGCAATTTGATCCAATAGTTCATCCTACTACTAGAGTTGATTTCATTCCAACAATGCTTTTTGGAAGGAAGACTAAGAGTCAAGATTTTAGAGGAATGTATTGTGCAGTGCTAATTGTGAATCAAATGATTGTATCTGCTGGAATATTCCGTGTGTTTGGGCTAGAAGTGGCGGAACTTCCCTTGGTGGCAACTGTTGCCGATTATCAAGGACAGGGTTACTTCAAAACCCTATTTAATTGTATCGAGGATTTGCTTAGAACATTAAAAGTTAAACATTTTGTTCTACCTGCTGCAACTGAAGCTGAATCATTATGGACTAGTAAATTTGGATTTACAAAGCTAGACCAAGATGGGATCAACAATTATAGGAGATACTATCACATGATGACGTTTCAAGGAACCTCGTTACTACATAAGCCAATTCCTGCACTTTGA 2379 0.3758 MLSGVRTGLKREFAFAMKYQSEIYVSTGRTRSNMTQNAVQVPNRSNKKRYKKSNLEKPKSGNLTDLVKNKEEDGDTMNEKKAKSDAYNSEEPKSQVGGEATTIVCKEMYKSDETKTKVVQTKKQLTCDDEIKDGAGGNDSMLGCKAKPTRRFTQSTLKNLDDGDGKVASDGVQKKVESDFVKITKDFAGNKFPSKLKDLLSSRILDGLPVNYVRSTKAKVVGTRGVISGNGVVCYCEVCNGIEVVTPTVFELHAGSSNKRPPEYIFLENGNTLRDVMNMFLNIPLRTLEEALQRILGAFIFKKSKFCVNCRDMLPKLVDSGMKQNACHRKSQGKLTKKDLRLHKLVFEADVLPDGTEVSYYSHGQKLLVGYKKGYGIICSCCNNELSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSITLSKDPRFSTNDNDDLCRICLDGGDLLCCDSCPRAFHKECVNLPCIPSGVWYCKYCQNKFQKDKYVERNENAKAAGRIDGIDPLEQINQRCIRIVKEFDYGGCALCRCQYFTKSFGPRTVIICDQCEKEYHIVCLKNHNIQNLKELPKGNWFCSSNCNQIHTDLASLVARGEENIPNSLLSVIKKKYDDKGLKNGDDLDIKWRVLNWKLDESDENEEMLSKVVDIFHEQFDPIVHPTTRVDFIPTMLFGRKTKSQDFRGMYCAVLIVNQMIVSAGIFRVFGLEVAELPLVATVADYQGQGYFKTLFNCIEDLLRTLKVKHFVLPAATEAESLWTSKFGFTKLDQDGINNYRRYYHMMTFQGTSLLHKPIPAL 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00854 792 SMART PHD_3 527 577 IPR001965 -
Cca04g00854 792 SMART PHD_3 436 477 IPR001965 -
Cca04g00854 792 CDD NAT_SF 682 743 - -
Cca04g00854 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 506 IPR013083 -
Cca04g00854 792 Pfam Tify domain binding domain 225 279 IPR032308 -
Cca04g00854 792 Pfam Tify domain binding domain 370 418 IPR032308 -
Cca04g00854 792 MobiDBLite consensus disorder prediction 55 88 - -
Cca04g00854 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 521 580 IPR013083 -
Cca04g00854 792 Gene3D - 618 787 - -
Cca04g00854 792 ProSitePatterns Zinc finger PHD-type signature. 437 476 IPR019786 -
Cca04g00854 792 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 678 763 IPR016181 -
Cca04g00854 792 SUPERFAMILY FYVE/PHD zinc finger 423 480 IPR011011 -
Cca04g00854 792 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 629 790 IPR000182 GO:0016407
Cca04g00854 792 CDD PHD1_AIRE 436 476 - -
Cca04g00854 792 MobiDBLite consensus disorder prediction 34 95 - -
Cca04g00854 792 SUPERFAMILY FYVE/PHD zinc finger 522 576 IPR011011 -
Cca04g00854 792 ProSiteProfiles Zinc finger PHD-type profile. 434 479 IPR019787 -
Cca04g00854 792 PANTHER AUTOIMMUNE REGULATOR 2 788 - -
Cca04g00854 792 PANTHER AUTOIMMUNE REGULATOR 2 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00854 Cca-Chr4 8900233 8907997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00854 334 789 PHD Transcription Factor Family AT2G36720 54.783 1.04e-176 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00854 - - pvu:PHAVU_011G087000g 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00854 04 8900233 8907997 Cca04g00854 04 8900233 8907997 ECH
Cca10g00566 10 6139819 6147988 Cca04g00854 04 8900233 8907997 PCT